Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects von Moore, Jessica A. M., Abraham, Paul E., Michener, Joshua K., Muchero, Wellington, Cregger, Melissa A.

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Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways von Michener, Joshua K., Thodey, Kate, Liang, Joe C., Smolke, Christina D.

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Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases von Michener, Joshua K, Nielsen, Jens, Smolke, Christina D

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PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements von Bilbao, Aivett, Munoz, Nathalie, Kim, Joonhoon, Orton, Daniel J., Gao, Yuqian, Poorey, Kunal, Pomraning, Kyle R., Weitz, Karl, Burnet, Meagan, Nicora, Carrie D., Wilton, Rosemarie, Deng, Shuang, Dai, Ziyu, Oksen, Ethan, Gee, Aaron, Fasani, Rick A., Tsalenko, Anya, Tanjore, Deepti, Gardner, James, Smith, Richard D., Michener, Joshua K., Gladden, John M., Baker, Erin S., Petzold, Christopher J., Kim, Young-Mo, Apffel, Alex, Magnuson, Jon K., Burnum-Johnson, Kristin E.

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Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans von Metz, Fletcher, Olsen, Abigail M, Lu, Fachuang, Myers, Kevin S, Allemann, Marco N, Michener, Joshua K, Noguera, Daniel R, Donohue, Timothy J

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Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination von Vasileva, Delyana P, Streich, Jared C, Burdick, Leah H, Klingeman, Dawn M, Chhetri, Hari B, Brelsford, Christa M, Ellis, J Christopher, Close, Dan M, Jacobson, Daniel A, Michener, Joshua K

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Pseudodesulfovibrio mercurii sp. nov., a mercury-methylating bacterium isolated from sediment von Gilmour, Cynthia C, Soren, Ally Bullock, Gionfriddo, Caitlin M, Podar, Mircea, Wall, Judy D, Brown, Steven D, Michener, Joshua K, Urriza, Maria Soledad Goñi, Elias, Dwayne A

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Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation von Houser, John R, Barnhart, Craig, Boutz, Daniel R, Carroll, Sean M, Dasgupta, Aurko, Michener, Joshua K, Needham, Brittany D, Papoulas, Ophelia, Sridhara, Viswanadham, Sydykova, Dariya K, Marx, Christopher J, Trent, M Stephen, Barrick, Jeffrey E, Marcotte, Edward M, Wilke, Claus O

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Catabolic pathway acquisition by rhizosphere bacteria readily enables growth with a root exudate component but does not affect root colonization von Christel, Stephan, Carrell, Alyssa A, Hochanadel, Leah H, Villalobos Solis, Manuel I, Abraham, Paul E, Jawdy, Sara S, Chaves, Julie E, Engle, Nancy L, Berhane, Timkhite-Kulu, Yao, Tao, Chen, Jin-Gui, Muchero, Wellington, Tschaplinski, Timothy J, Cregger, Melissa A, Michener, Joshua K

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Microbial assimilation of lignin-derived aromatic compounds and conversion to value-added products von Azubuike, Christopher C, Allemann, Marco N, Michener, Joshua K

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Hardwood Tree Genomics: Unlocking Woody Plant Biology von Tuskan, Gerald A, Groover, Andrew T, Schmutz, Jeremy, DiFazio, Stephen Paul, Myburg, Alexander, Grattapaglia, Dario, Smart, Lawrence B, Yin, Tongming, Aury, Jean-Marc, Kremer, Antoine, Leroy, Thibault, Le Provost, Gregoire, Plomion, Christophe, Carlson, John E, Randall, Jennifer, Westbrook, Jared, Grimwood, Jane, Muchero, Wellington, Jacobson, Daniel, Michener, Joshua K

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Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System von Cregger, Melissa A., Carper, Dana L., Christel, Stephan, Doktycz, Mitchel J., Labbé, Jessy, Michener, Joshua K., Dove, Nicholas C., Johnston, Eric R., Moore, Jessica A. M., Vélez, Jessica M., Morrell-Falvey, Jennifer, Muchero, Wellington, Pelletier, Dale A., Retterer, Scott, Tschaplinski, Timothy J., Tuskan, Gerald A., Weston, David J., Schadt, Christopher W.

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Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design von Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.

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Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement von Michener, Joshua K, Camargo Neves, Aline A, Vuilleumier, Stéphane, Bringel, Françoise, Marx, Christopher J

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High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch von Michener, Joshua K., Smolke, Christina D.

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Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid von Elmore, Joshua R., Dexter, Gara N., Salvachúa, Davinia, O'Brien, Marykate, Klingeman, Dawn M., Gorday, Kent, Michener, Joshua K., Peterson, Darren J., Beckham, Gregg T., Guss, Adam M.

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Identification of parallel and divergent optimization solutions for homologous metabolic enzymes von Standaert, Robert F., Giannone, Richard J., Michener, Joshua K.

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Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans von Cecil, Jacob H, Garcia, David C, Giannone, Richard J, Michener, Joshua K

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Sphingobium lignivorans sp. nov., isolated from river sediment downstream of a paper mill von Allemann, Marco N, Presley, Gerald N, Elkins, James G, Michener, Joshua K

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Construction and Optimization of a Heterologous Pathway for Protocatechuate Catabolism in Escherichia coli Enables Bioconversion of Model Aromatic Compounds von Clarkson, Sonya M, Giannone, Richard J, Kridelbaugh, Donna M, Elkins, James G, Guss, Adam M, Michener, Joshua K

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