Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays von Coombs, Catherine C, Gillis, Nancy K, Tan, Xianming, Berg, Jonathan S, Ball, Markus, Balasis, Maria E, Montgomery, Nathan D, Bolton, Kelly L, Parker, Joel S, Mesa, Tania E, Yoder, Sean J, Hayward, Michele C, Patel, Nirali M, Richards, Kristy L, Walko, Christine M, Knepper, Todd C, Soper, John T, Weiss, Jared, Grilley-Olson, Juneko E, Kim, William Y, Earp, 3rd, H Shelton, Levine, Ross L, Papaemmanuil, Elli, Zehir, Ahmet, Hayes, D Neil, Padron, Eric

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Differential pathogenesis of lung adenocarcinoma subtypes involving sequence mutations, copy number, chromosomal instability, and methylation von Wilkerson, Matthew D, Yin, Xiaoying, Walter, Vonn, Zhao, Ni, Cabanski, Christopher R, Hayward, Michele C, Miller, C Ryan, Socinski, Mark A, Parsons, Alden M, Thorne, Leigh B, Haithcock, Benjamin E, Veeramachaneni, Nirmal K, Funkhouser, William K, Randell, Scott H, Bernard, Philip S, Perou, Charles M, Hayes, D Neil

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Factor XIIIA—expressing inflammatory monocytes promote lung squamous cancer through fibrin cross-linking von Porrello, Alessandro, Leslie, Patrick L., Harrison, Emily B., Gorentla, Balachandra K., Kattula, Sravya, Ghosh, Subrata K., Azam, Salma H., Holtzhausen, Alisha, Chao, Yvonne L., Hayward, Michele C., Waugh, Trent A., Bae, Sanggyu, Godfrey, Virginia, Randell, Scott H., Oderup, Cecilia, Makowski, Liza, Weiss, Jared, Wilkerson, Matthew D., Hayes, D. Neil, Earp, H. Shelton, Baldwin, Albert S., Wolberg, Alisa S., Pecot, Chad V.

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Germline Analysis from Tumor-Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings von Seifert, Bryce A, O'Daniel, Julianne M, Amin, Krunal, Marchuk, Daniel S, Patel, Nirali M, Parker, Joel S, Hoyle, Alan P, Mose, Lisle E, Marron, Andrew, Hayward, Michele C, Bizon, Christopher, Wilhelmsen, Kirk C, Evans, James P, Earp, 3rd, H Shelton, Sharpless, Norman E, Hayes, D Neil, Berg, Jonathan S

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Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing von Patel, Nirali M., Michelini, Vanessa V., Snell, Jeff M., Balu, Saianand, Hoyle, Alan P., Parker, Joel S., Hayward, Michele C., Eberhard, David A., Salazar, Ashley H., McNeillie, Patrick, Xu, Jia, Huettner, Claudia S., Koyama, Takahiko, Utro, Filippo, Rhrissorrakrai, Kahn, Norel, Raquel, Bilal, Erhan, Royyuru, Ajay, Parida, Laxmi, Earp, H. Shelton, Grilley‐Olson, Juneko E., Hayes, D. Neil, Harvey, Stephen J., Sharpless, Norman E., Kim, William Y.

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Lung Squamous Cell Carcinoma mRNA Expression Subtypes Are Reproducible, Clinically Important, and Correspond to Normal Cell Types von WILKERSON, Matthew D, XIAOYING YIN, PARSONS, Alden M, FUNKHOUSER, William K, LEE, Carrie B, ROBERTS, Patrick J, THORNE, Leigh, BERNARD, Philip S, PEROU, Charles M, HAYS, D. Neil, HOADLEY, Katherine A, YUFENG LIU, HAYWARD, Michele C, CABANSKI, Christopher R, MULDREW, Kenneth, MILLER, C. Ryan, RANDELL, Scott H, SOCINSKI, Mark A

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SCISSOR: a framework for identifying structural changes in RNA transcripts von Choi, Hyo Young, Jo, Heejoon, Zhao, Xiaobei, Hoadley, Katherine A., Newman, Scott, Holt, Jeremiah, Hayward, Michele C., Love, Michael I., Marron, J. S., Hayes, D. Neil

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CRTC1/MAML2 directs a PGC-1α-IGF-1 circuit that confers vulnerability to PPARγ inhibition von Musicant, Adele M., Parag-Sharma, Kshitij, Gong, Weida, Sengupta, Monideepa, Chatterjee, Arindam, Henry, Erin C., Tsai, Yi-Hsuan, Hayward, Michele C., Sheth, Siddharth, Betancourt, Renee, Hackman, Trevor G., Padilla, Ricardo J., Parker, Joel S., Giudice, Jimena, Flaveny, Colin A., Hayes, David N., Amelio, Antonio L.

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Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC von Zhao, Xiaobei, Wang, Anyou, Walter, Vonn, Patel, Nirali M, Eberhard, David A, Hayward, Michele C, Salazar, Ashley H, Jo, Heejoon, Soloway, Matthew G, Wilkerson, Matthew D, Parker, Joel S, Yin, Xiaoying, Zhang, Guosheng, Siegel, Marni B, Rosson, Gary B, Earp, 3rd, H Shelton, Sharpless, Norman E, Gulley, Margaret L, Weck, Karen E, Hayes, D Neil, Moschos, Stergios J

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Emerging technologies for improved stratification of cancer patients: a review of opportunities, challenges, and tools von Lamlertthon, Wisut, Hayward, Michele C, Hayes, David Neil

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UNMASC: tumor-only variant calling with unmatched normal controls von Little, Paul, Jo, Heejoon, Hoyle, Alan, Mazul, Angela, Zhao, Xiaobei, Salazar, Ashley H, Farquhar, Douglas, Sheth, Siddharth, Masood, Maheer, Hayward, Michele C, Parker, Joel S, Hoadley, Katherine A, Zevallos, Jose, Hayes, D Neil

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Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes von Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D, Cabanski, Christopher R, Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C, Salazar, Ashley H, Hoadley, Katherine A, Fritchie, Karen, Sailey, Charles J, Sailey, Charles G, Weissler, Mark C, Shockley, William W, Zanation, Adam M, Hackman, Trevor, Thorne, Leigh B, Funkhouser, William D, Muldrew, Kenneth L, Olshan, Andrew F, Randell, Scott H, Wright, Fred A, Shores, Carol G, Hayes, D Neil

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Fibroblast growth factor receptor 3 alterations and response to immune checkpoint inhibition in metastatic urothelial cancer: a real world experience von Rose, Tracy L., Weir, William H., Mayhew, Gregory M., Shibata, Yoichiro, Eulitt, Patrick, Uronis, Joshua M., Zhou, Mi, Nielsen, Matthew, Smith, Angela B., Woods, Michael, Hayward, Michele C., Salazar, Ashley H., Milowsky, Matthew I., Wobker, Sara E., McGinty, Katrina, Millburn, Michael V., Eisner, Joel R., Kim, William Y.

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Nutritional Needs of Patients with Malignancies of the Head and Neck von Hayward, Michele C., Shea, Aimee M.

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SWISS MADE: Standardized WithIn Class Sum of Squares to evaluate methodologies and dataset elements von Cabanski, Christopher R, Qi, Yuan, Yin, Xiaoying, Bair, Eric, Hayward, Michele C, Fan, Cheng, Li, Jianying, Wilkerson, Matthew D, Marron, J S, Perou, Charles M, Hayes, D Neil

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Noncanonical HPV carcinogenesis drives radiosensitization of head and neck tumors von Schrank, Travis P, Kothari, Aditi, Weir, William H, Stepp, Wesley H, Rehmani, Hina, Liu, Xinyi, Wang, Xiaowei, Sewell, Andrew, Li, Xue, Tasoulas, Jason, Kim, Sulgi, Yarbrough, Gray, Xie, Yue, Flamand, Yael, Marur, Shanthi, Hayward, Michele C, Wu, Di, Burtness, Barbara, Anderson, Karen S, Baldwin, Albert S, Yarbrough, Wendell G, Issaeva, Natalia

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Sequencing of genes of drug response in tumor DNA and implications for precision medicine in cancer patients von Gillis, Nancy, Etheridge, Amy S., Patil, Sushant A., Hayes, D. Neil, Hayward, Michele C., Auman, J. Todd, Parker, Joel S., Innocenti, Federico

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MVisAGe Identifies Concordant and Discordant Genomic Alterations of Driver Genes in Squamous Tumors von Walter, Vonn, Du, Ying, Danilova, Ludmila, Hayward, Michele C, Hayes, D Neil

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Phase II efficacy and pharmacogenomic study of Selumetinib (AZD6244; ARRY-142886) in iodine-131 refractory papillary thyroid carcinoma with or without follicular elements von Hayes, D Neil, Lucas, Amy S, Tanvetyanon, Tawee, Krzyzanowska, Monika K, Chung, Christine H, Murphy, Barbara A, Gilbert, Jill, Mehra, Ranee, Moore, Dominic T, Sheikh, Arif, Hoskins, Janelle, Hayward, Michele C, Zhao, Ni, O'Connor, Wendi, Weck, Karen E, Cohen, Roger B, Cohen, Ezra E W

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LKB1 loss links serine metabolism to DNA methylation and tumorigenesis von Kottakis, Filippos, Nicolay, Brandon N., Roumane, Ahlima, Karnik, Rahul, Gu, Hongcang, Nagle, Julia M., Boukhali, Myriam, Hayward, Michele C., Li, Yvonne Y., Chen, Ting, Liesa, Marc, Hammerman, Peter S., Wong, Kwok Kin, Hayes, D. Neil, Shirihai, Orian S., Dyson, Nicholas J., Haas, Wilhelm, Meissner, Alexander, Bardeesy, Nabeel

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