Massively parallel digital transcriptional profiling of single cells von Zheng, Grace X. Y., Terry, Jessica M., Belgrader, Phillip, Ryvkin, Paul, Bent, Zachary W., Wilson, Ryan, Ziraldo, Solongo B., Wheeler, Tobias D., McDermott, Geoff P., Zhu, Junjie, Gregory, Mark T., Shuga, Joe, Montesclaros, Luz, Underwood, Jason G., Masquelier, Donald A., Nishimura, Stefanie Y., Schnall-Levin, Michael, Wyatt, Paul W., Hindson, Christopher M., Bharadwaj, Rajiv, Wong, Alexander, Ness, Kevin D., Beppu, Lan W., Deeg, H. Joachim, McFarland, Christopher, Loeb, Keith R., Valente, William J., Ericson, Nolan G., Stevens, Emily A., Radich, Jerald P., Mikkelsen, Tarjei S., Hindson, Benjamin J., Bielas, Jason H.

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Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing von Frampton, Garrett M, Fichtenholtz, Alex, Otto, Geoff A, Wang, Kai, Downing, Sean R, He, Jie, Schnall-Levin, Michael, White, Jared, Sanford, Eric M, An, Peter, Sun, James, Juhn, Frank, Brennan, Kristina, Iwanik, Kiel, Maillet, Ashley, Buell, Jamie, White, Emily, Zhao, Mandy, Balasubramanian, Sohail, Terzic, Selmira, Richards, Tina, Banning, Vera, Garcia, Lazaro, Mahoney, Kristen, Zwirko, Zac, Donahue, Amy, Beltran, Himisha, Mosquera, Juan Miguel, Rubin, Mark A, Dogan, Snjezana, Hedvat, Cyrus V, Berger, Michael F, Pusztai, Lajos, Lechner, Matthias, Boshoff, Chris, Jarosz, Mirna, Vietz, Christine, Parker, Alex, Miller, Vincent A, Ross, Jeffrey S, Curran, John, Cronin, Maureen T, Stephens, Philip J, Lipson, Doron, Yelensky, Roman

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Extensive sequencing of seven human genomes to characterize benchmark reference materials von Zook, Justin M., Catoe, David, McDaniel, Jennifer, Vang, Lindsay, Spies, Noah, Sidow, Arend, Weng, Ziming, Liu, Yuling, Mason, Christopher E., Alexander, Noah, Henaff, Elizabeth, McIntyre, Alexa B.R., Chandramohan, Dhruva, Chen, Feng, Jaeger, Erich, Moshrefi, Ali, Pham, Khoa, Stedman, William, Liang, Tiffany, Saghbini, Michael, Dzakula, Zeljko, Hastie, Alex, Cao, Han, Deikus, Gintaras, Schadt, Eric, Sebra, Robert, Bashir, Ali, Truty, Rebecca M., Chang, Christopher C., Gulbahce, Natali, Zhao, Keyan, Ghosh, Srinka, Hyland, Fiona, Fu, Yutao, Chaisson, Mark, Xiao, Chunlin, Trow, Jonathan, Sherry, Stephen T., Zaranek, Alexander W., Ball, Madeleine, Bobe, Jason, Estep, Preston, Church, George M., Marks, Patrick, Kyriazopoulou-Panagiotopoulou, Sofia, Zheng, Grace X.Y., Schnall-Levin, Michael, Ordonez, Heather S., Mudivarti, Patrice A., Giorda, Kristina, Sheng, Ying, Rypdal, Karoline Bjarnesdatter, Salit, Marc

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Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3′UTRs von Schnall-Levin, Michael, Zhao, Yong, Perrimon, Norbert, Berger, Bonnie, Sharp, Phillip A.

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Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs von Schnall-Levin, Michael, Rissland, Olivia S, Johnston, Wendy K, Perrimon, Norbert, Bartel, David P, Berger, Bonnie

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High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics von Rotem, Assaf, Ram, Oren, Shoresh, Noam, Sperling, Ralph A, Schnall-Levin, Michael, Zhang, Huidan, Basu, Anindita, Bernstein, Bradley E, Weitz, David A

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Genetic determinants of phosphate response in Drosophila von Bergwitz, Clemens, Wee, Mark J, Sinha, Sumi, Huang, Joanne, DeRobertis, Charles, Mensah, Lawrence B, Cohen, Jonathan, Friedman, Adam, Kulkarni, Meghana, Hu, Yanhui, Vinayagam, Arunachalam, Schnall-Levin, Michael, Berger, Bonnie, Perkins, Lizabeth A, Mohr, Stephanie E, Perrimon, Norbert

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A hybrid approach for de novo human genome sequence assembly and phasing von Mostovoy, Yulia, Levy-Sakin, Michal, Lam, Jessica, Lam, Ernest T, Hastie, Alex R, Marks, Patrick, Lee, Joyce, Chu, Catherine, Lin, Chin, Džakula, Željko, Cao, Han, Schlebusch, Stephen A, Giorda, Kristina, Schnall-Levin, Michael, Wall, Jeffrey D, Kwok, Pui-Yan

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Haplotyping germline and cancer genomes with high-throughput linked-read sequencing von Zheng, Grace X Y, Lau, Billy T, Schnall-Levin, Michael, Jarosz, Mirna, Bell, John M, Hindson, Christopher M, Kyriazopoulou-Panagiotopoulou, Sofia, Masquelier, Donald A, Merrill, Landon, Terry, Jessica M, Mudivarti, Patrice A, Wyatt, Paul W, Bharadwaj, Rajiv, Makarewicz, Anthony J, Li, Yuan, Belgrader, Phillip, Price, Andrew D, Lowe, Adam J, Marks, Patrick, Vurens, Gerard M, Hardenbol, Paul, Montesclaros, Luz, Luo, Melissa, Greenfield, Lawrence, Wong, Alexander, Birch, David E, Short, Steven W, Bjornson, Keith P, Patel, Pranav, Hopmans, Erik S, Wood, Christina, Kaur, Sukhvinder, Lockwood, Glenn K, Stafford, David, Delaney, Joshua P, Wu, Indira, Ordonez, Heather S, Grimes, Susan M, Greer, Stephanie, Lee, Josephine Y, Belhocine, Kamila, Giorda, Kristina M, Heaton, William H, McDermott, Geoffrey P, Bent, Zachary W, Meschi, Francesca, Kondov, Nikola O, Wilson, Ryan, Bernate, Jorge A, Gauby, Shawn, Kindwall, Alex, Bermejo, Clara, Fehr, Adrian N, Chan, Adrian, Saxonov, Serge, Ness, Kevin D, Hindson, Benjamin J, Ji, Hanlee P

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Resolving the full spectrum of human genome variation using Linked-Reads von Marks, Patrick, Garcia, Sarah, Barrio, Alvaro Martinez, Belhocine, Kamila, Bernate, Jorge, Bharadwaj, Rajiv, Bjornson, Keith, Catalanotti, Claudia, Delaney, Josh, Fehr, Adrian, Fiddes, Ian T, Galvin, Brendan, Heaton, Haynes, Herschleb, Jill, Hindson, Christopher, Holt, Esty, Jabara, Cassandra B, Jett, Susanna, Keivanfar, Nikka, Kyriazopoulou-Panagiotopoulou, Sofia, Lek, Monkol, Lin, Bill, Lowe, Adam, Mahamdallie, Shazia, Maheshwari, Shamoni, Makarewicz, Tony, Marshall, Jamie, Meschi, Francesca, O'Keefe, Christopher J, Ordonez, Heather, Patel, Pranav, Price, Andrew, Royall, Ariel, Ruark, Elise, Seal, Sheila, Schnall-Levin, Michael, Shah, Preyas, Stafford, David, Williams, Stephen, Wu, Indira, Xu, Andrew Wei, Rahman, Nazneen, MacArthur, Daniel, Church, Deanna M

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Health and population effects of rare gene knockouts in adult humans with related parents von Narasimhan, Vagheesh M., Hunt, Karen A., Mason, Dan, Baker, Christopher L., Karczewski, Konrad J., Barnes, Michael R., Barnett, Anthony H., Bates, Chris, Bellary, Srikanth, Bockett, Nicholas A., Giorda, Kristina, Griffiths, Christopher J., Hemingway, Harry, Jia, Zhilong, Kelly, M. Ann, Khawaja, Hajrah A., Lek, Monkol, McCarthy, Shane, McEachan, Rosie, O'Donnell-Luria, Anne, Paigen, Kenneth, Parisinos, Constantinos A., Sheridan, Eamonn, Southgate, Laura, Tee, Louise, Thomas, Mark, Xue, Yali, Schnall-Levin, Michael, Petkov, Petko M., Tyler-Smith, Chris, Maher, Eamonn R., Trembath, Richard C., MacArthur, Daniel G., Wright, John, Durbin, Richard, van Heel, David A.

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A transgenic resource for conditional competitive inhibition of conserved Drosophila microRNAs von Fulga, Tudor A., McNeill, Elizabeth M., Binari, Richard, Yelick, Julia, Blanche, Alexandra, Booker, Matthew, Steinkraus, Bruno R., Schnall-Levin, Michael, Zhao, Yong, DeLuca, Todd, Bejarano, Fernando, Han, Zhe, Lai, Eric C., Wall, Dennis P., Perrimon, Norbert, Van Vactor, David

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Abstract 3400: Characterizing genomic variation and tumor heterogeneity in cancer von Catalanotti, Claudia, Garcia, Sarah, Belhocine, Kamila, Kumar, Vijay, Dzakula, Zeljko, Price, Andrew, Maheshwar, Shamoni, Yin, Yifeng, Schnall-Levin, Michael, Bharadwaj, Rajiv, Le, Sara Agee, Church, Deanna M.

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Abstract 3395: A scalable microfluidic platform for determining cellular heterogeneity by copy number detection von Price, Andrew, Sorenson, Jon, Belhocine, Kamila, Catalanotti, Claudia, Dzakula, Zeljko, Jett, Susana, Kumar, Viajy, Lin, Bill, Makarewicz, Tony, Puleo, Alaina, Rahimi, Mohammad, Sawhney, Sanjam, Shuga, Joe, Song, Maengseok, Sullivan-Bibee, Katie, Wheeler, Tobias, Yin, Yifeng, Schnall-Levin, Michael, Bharadwaj, Rajiv

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Abstract 281: Identifying genetic variation and cellular heterogeneity with a comprehensive cancer analysis toolkit von Garcia, Sarah, Bharadwaj, Rajiv, Boutet, Stéphane, Catalanotti, Claudia, Giangerra, Valeria, Lee, Josephine, Terry, Jessica, Williams, Stephen, Zheng, Grace X., Mikkelsen, Tarjei, Schnall-Levin, Michael, Hindson, Ben, Church, Deanna M.

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Abstract 4742: Using 1ng of DNA to detect haplotype phasing and gene fusions from whole exome sequencing of cancer cell lines von Jarosz, Mirna, Schnall-Levin, Michael, Zheng, Grace X. Y., Marks, Patrick, Kyriazopoulou-Panagiotopoulou, Sofia, Mudivarti, Patrice, Giorda, Kristina

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Abstract 4882: Megabase-scale phased haplotypes of genetic aberrations from whole cancer genome sequencing of primary colorectal tumors von Lau, Billy, Bell, John M., Schnall-Levin, Michael, Jarosz, Mirna, Hopmans, Erik, Wood, Christina M., Zheng, Grace X., Giorda, Kristina, Ji, Hanlee P.

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Abstract 3602: Linked-Reads enable detailed, phased resolution of structural variation in the cancer genome von Kyriazopoulou-Panagiotopoulou, Sofia, Marks, Patrick, Heaton, Haynes, Ordonez, Heather, Giorda, Kristina, Jabara, Cassandra, Lau, Billy, Bell, John M., Schnall-Levin, Michael, Ji, Hanlee P.

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Abstract 150: Single cell mRNA quantification from 1000s of cells in healthy and malignant tumor samples using a high-throughput droplet-based system von Zheng, Grace X.y., Mikkelsen, Tarjei, Terry, Jessica, Belgrader, Phillip, Ryvkin, Paul, Wilson, Ryan, Wheeler, Tobias D., Bent, Zachary, McDermott, Geoff, Ziraldo, Solongo, Wong, Alexander, Schnall-Levin, Michael, Hindson, Ben

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High-Throughput Single-Cell Labeling von Rotem, Assaf, Ram, Oren, Shoresh, Noam, Sperling, Ralph A, Schnall-Levin, Michael, Zhang, Huidan, Basu, Anindita, Bernstein, Bradley E, Weitz, David A

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