Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species von Capuano, Floriana, Mülleder, Michael, Kok, Robert, Blom, Henk J, Ralser, Markus

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Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast von Rubio, Angela, Ghosh, Sanjay, Mülleder, Michael, Ralser, Markus, Mata, Juan

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Functional Metabolomics Describes the Yeast Biosynthetic Regulome von Mülleder, Michael, Calvani, Enrica, Alam, Mohammad Tauqeer, Wang, Richard Kangda, Eckerstorfer, Florian, Zelezniak, Aleksej, Ralser, Markus

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dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts von Demichev, Vadim, Szyrwiel, Lukasz, Yu, Fengchao, Teo, Guo Ci, Rosenberger, George, Niewienda, Agathe, Ludwig, Daniela, Decker, Jens, Kaspar-Schoenefeld, Stephanie, Lilley, Kathryn S., Mülleder, Michael, Nesvizhskii, Alexey I., Ralser, Markus

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Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow von Ponomarova, Olga, Gabrielli, Natalia, Sévin, Daniel C., Mülleder, Michael, Zirngibl, Katharina, Bulyha, Katsiaryna, Andrejev, Sergej, Kafkia, Eleni, Typas, Athanasios, Sauer, Uwe, Ralser, Markus, Patil, Kiran Raosaheb

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Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism von Olin-Sandoval, Viridiana, Yu, Jason Shu Lim, Miller-Fleming, Leonor, Alam, Mohammad Tauqeer, Kamrad, Stephan, Correia-Melo, Clara, Haas, Robert, Segal, Joanna, Peña Navarro, David Alejandro, Herrera-Dominguez, Lucia, Méndez-Lucio, Oscar, Vowinckel, Jakob, Mülleder, Michael, Ralser, Markus

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Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection von Messner, Christoph B., Demichev, Vadim, Wendisch, Daniel, Michalick, Laura, White, Matthew, Freiwald, Anja, Textoris-Taube, Kathrin, Vernardis, Spyros I., Egger, Anna-Sophia, Kreidl, Marco, Ludwig, Daniela, Kilian, Christiane, Agostini, Federica, Zelezniak, Aleksej, Thibeault, Charlotte, Pfeiffer, Moritz, Hippenstiel, Stefan, Hocke, Andreas, von Kalle, Christof, Campbell, Archie, Hayward, Caroline, Porteous, David J., Marioni, Riccardo E., Langenberg, Claudia, Lilley, Kathryn S., Kuebler, Wolfgang M., Mülleder, Michael, Drosten, Christian, Suttorp, Norbert, Witzenrath, Martin, Kurth, Florian, Sander, Leif Erik, Ralser, Markus

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Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition von Vowinckel, Jakob, Zelezniak, Aleksej, Bruderer, Roland, Mülleder, Michael, Reiter, Lukas, Ralser, Markus

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Virus-induced senescence is a driver and therapeutic target in COVID-19 von Lee, Soyoung, Yu, Yong, Trimpert, Jakob, Benthani, Fahad, Mairhofer, Mario, Richter-Pechanska, Paulina, Wyler, Emanuel, Belenki, Dimitri, Kaltenbrunner, Sabine, Pammer, Maria, Kausche, Lea, Firsching, Theresa C., Dietert, Kristina, Schotsaert, Michael, Martínez-Romero, Carles, Singh, Gagandeep, Kunz, Séverine, Niemeyer, Daniela, Ghanem, Riad, Salzer, Helmut J. F., Paar, Christian, Mülleder, Michael, Uccellini, Melissa, Michaelis, Edward G., Khan, Amjad, Lau, Andrea, Schönlein, Martin, Habringer, Anna, Tomasits, Josef, Adler, Julia M., Kimeswenger, Susanne, Gruber, Achim D., Hoetzenecker, Wolfram, Steinkellner, Herta, Purfürst, Bettina, Motz, Reinhard, Di Pierro, Francesco, Lamprecht, Bernd, Osterrieder, Nikolaus, Landthaler, Markus, Drosten, Christian, García-Sastre, Adolfo, Langer, Rupert, Ralser, Markus, Eils, Roland, Reimann, Maurice, Fan, Dorothy N. Y., Schmitt, Clemens A.

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Quantitative protein biomarker panels: a path to improved clinical practice through proteomics von Hartl, Johannes, Kurth, Florian, Kappert, Kai, Horst, David, Mülleder, Michael, Hartmann, Gunther, Ralser, Markus

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Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer’s disease mouse model von Freitag, Kiara, Sterczyk, Nele, Wendlinger, Sarah, Obermayer, Benedikt, Schulz, Julia, Farztdinov, Vadim, Mülleder, Michael, Ralser, Markus, Houtman, Judith, Fleck, Lara, Braeuning, Caroline, Sansevrino, Roberto, Hoffmann, Christian, Milovanovic, Dragomir, Sigrist, Stephan J, Conrad, Thomas, Beule, Dieter, Heppner, Frank L, Jendrach, Marina

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High-throughput proteomics of nanogram-scale samples with Zeno SWATH MS von Wang, Ziyue, Mülleder, Michael, Batruch, Ihor, Chelur, Anjali, Textoris-Taube, Kathrin, Schwecke, Torsten, Hartl, Johannes, Causon, Jason, Castro-Perez, Jose, Demichev, Vadim, Tate, Stephen, Ralser, Markus

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Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts von Zelezniak, Aleksej, Vowinckel, Jakob, Capuano, Floriana, Messner, Christoph B., Demichev, Vadim, Polowsky, Nicole, Mülleder, Michael, Kamrad, Stephan, Klaus, Bernd, Keller, Markus A., Ralser, Markus

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Amino Acids Whose Intracellular Levels Change Most During Aging Alter Chronological Life Span of Fission Yeast von Rallis, Charalampos, Mülleder, Michael, Smith, Graeme, Au, Yan Zi, Ralser, Markus, Bähler, Jürg

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Intestinal epithelial c-Maf expression determines enterocyte differentiation and nutrient uptake in mice von Cosovanu, Catalina, Resch, Philipp, Jordan, Stefan, Lehmann, Andrea, Ralser, Markus, Farztdinov, Vadim, Spranger, Joachim, Mülleder, Michael, Brachs, Sebastian, Neumann, Christian

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The human host response to monkeypox infection: a proteomic case series study von Wang, Ziyue, Tober‐Lau, Pinkus, Farztdinov, Vadim, Lemke, Oliver, Schwecke, Torsten, Steinbrecher, Sarah, Muenzner, Julia, Kriedemann, Helene, Sander, Leif Erik, Hartl, Johannes, Mülleder, Michael, Ralser, Markus, Kurth, Florian

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Metabolite and protein associations with general health in the population-based CHRIS study von Hantikainen, Essi, Weichenberger, Christian X., Dordevic, Nikola, Verri Hernandes, Vinicius, Foco, Luisa, Gögele, Martin, Melotti, Roberto, Pattaro, Cristian, Ralser, Markus, Amari, Fatma, Farztdinov, Vadim, Mülleder, Michael, Pramstaller, Peter P., Rainer, Johannes, Domingues, Francisco S.

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Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance von Kamrad, Stephan, Grossbach, Jan, Rodríguez‐López, Maria, Mülleder, Michael, Townsend, StJohn, Cappelletti, Valentina, Stojanovski, Gorjan, Correia‐Melo, Clara, Picotti, Paola, Beyer, Andreas, Ralser, Markus, Bähler, Jürg

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The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation von Reinhold, Dirk, Farztdinov, Vadim, Yan, Yan, Meisel, Christian, Sadlowski, Henrik, Kühn, Joachim, Perschel, Frank H, Endres, Matthias, Düzel, Emrah, Vielhaber, Stefan, Guttek, Karina, Goihl, Alexander, Venø, Morten, Teegen, Bianca, Stöcker, Winfried, Stubbemann, Paula, Kurth, Florian, Sander, Leif E, Ralser, Markus, Otto, Carolin, Streit, Simon, Jarius, Sven, Ruprecht, Klemens, Radbruch, Helena, Kjems, Jørgen, Mülleder, Michael, Heppner, Frank, Körtvelyessy, Peter

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Inorganic sulfur fixation via a new homocysteine synthase allows yeast cells to cooperatively compensate for methionine auxotrophy von Yu, Jason S L, Heineike, Benjamin M, Hartl, Johannes, Aulakh, Simran K, Correia-Melo, Clara, Lehmann, Andrea, Lemke, Oliver, Agostini, Federica, Lee, Cory T, Demichev, Vadim, Messner, Christoph B, Mülleder, Michael, Ralser, Markus

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