MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function von Keegan, Kevin P., Glass, Elizabeth M., Meyer, Folker

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The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools von Wilke, Andreas, Harrison, Travis, Wilkening, Jared, Field, Dawn, Glass, Elizabeth M, Kyrpides, Nikos, Mavrommatis, Konstantinos, Meyer, Folker

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MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis von Meyer, Folker, Bagchi, Saurabh, Chaterji, Somali, Gerlach, Wolfgang, Grama, Ananth, Harrison, Travis, Paczian, Tobias, Trimble, William L, Wilke, Andreas

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The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome von McDonald, Daniel, Clemente, Jose C, Kuczynski, Justin, Rideout, Jai Ram, Stombaugh, Jesse, Wendel, Doug, Wilke, Andreas, Huse, Susan, Hufnagle, John, Meyer, Folker, Knight, Rob, Caporaso, J Gregory

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Spatial scale drives patterns in soil bacterial diversity von O'Brien, Sarah L., Gibbons, Sean M., Owens, Sarah M., Hampton-Marcell, Jarrad, Johnston, Eric R., Jastrow, Julie D., Gilbert, Jack A., Meyer, Folker, Antonopoulos, Dionysios A.

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The Genomic Standards Consortium von Field, Dawn, Amaral-Zettler, Linda, Cochrane, Guy, Cole, James R, Dawyndt, Peter, Garrity, George M, Gilbert, Jack, Glöckner, Frank Oliver, Hirschman, Lynette, Karsch-Mizrachi, Ilene, Klenk, Hans-Peter, Knight, Rob, Kottmann, Renzo, Kyrpides, Nikos, Meyer, Folker, San Gil, Inigo, Sansone, Susanna-Assunta, Schriml, Lynn M, Sterk, Peter, Tatusova, Tatiana, Ussery, David W, White, Owen, Wooley, John

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Long-term mitigation of drought changes the functional potential and life-strategies of the forest soil microbiome involved in organic matter decomposition von Hartmann, Martin, Herzog, Claude, Brunner, Ivano, Stierli, Beat, Meyer, Folker, Buchmann, Nina, Frey, Beat

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Unlocking the potential of metagenomics through replicated experimental design von Knight, Rob, Jansson, Janet, Field, Dawn, Fierer, Noah, Desai, Narayan, Fuhrman, Jed A, Hugenholtz, Phil, van der Lelie, Daniel, Meyer, Folker, Stevens, Rick, Bailey, Mark J, Gordon, Jeffrey I, Kowalchuk, George A, Gilbert, Jack A

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The RAST Server: rapid annotations using subsystems technology von Aziz, Ramy K, Bartels, Daniela, Best, Aaron A, DeJongh, Matthew, Disz, Terrence, Edwards, Robert A, Formsma, Kevin, Gerdes, Svetlana, Glass, Elizabeth M, Kubal, Michael, Meyer, Folker, Olsen, Gary J, Olson, Robert, Osterman, Andrei L, Overbeek, Ross A, McNeil, Leslie K, Paarmann, Daniel, Paczian, Tobias, Parrello, Bruce, Pusch, Gordon D, Reich, Claudia, Stevens, Rick, Vassieva, Olga, Vonstein, Veronika, Wilke, Andreas, Zagnitko, Olga

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Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice von Howe, Adina, Ringus, Daina L, Williams, Ryan J, Choo, Zi-Ning, Greenwald, Stephanie M, Owens, Sarah M, Coleman, Maureen L, Meyer, Folker, Chang, Eugene B

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Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak von Olivas, Andrea D, Shogan, Benjamin D, Valuckaite, Vesta, Zaborin, Alexander, Belogortseva, Natalya, Musch, Mark, Meyer, Folker, Trimble, William L, An, Gary, Gilbert, Jack, Zaborina, Olga, Alverdy, John C

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The MG-RAST API explorer: an on-ramp for RESTful query composition von Paczian, Tobias, Trimble, William L, Gerlach, Wolfgang, Harrison, Travis, Wilke, Andreas, Meyer, Folker

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UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example von Thomas, Alexander, Battenfeld, Thomas, Kraiselburd, Ivana, Anastasiou, Olympia, Dittmer, Ulf, Dörr, Ann-Kathrin, Dörr, Adrian, Elsner, Carina, Gosch, Jule, Le-Trilling, Vu Thuy Khanh, Magin, Simon, Scholtysik, René, Yilmaz, Pelin, Trilling, Mirko, Schöler, Lara, Köster, Johannes, Meyer, Folker

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Structure, fluctuation and magnitude of a natural grassland soil metagenome von Delmont, Tom O, Prestat, Emmanuel, Keegan, Kevin P, Faubladier, Michael, Robe, Patrick, Clark, Ian M, Pelletier, Eric, Hirsch, Penny R, Meyer, Folker, Gilbert, Jack A, Le Paslier, Denis, Simonet, Pascal, Vogel, Timothy M

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FIGfams: yet another set of protein families von Meyer, Folker, Overbeek, Ross, Rodriguez, Alex

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Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG von Mitra, Suparna, Rupek, Paul, Richter, Daniel C, Urich, Tim, Gilbert, Jack A, Meyer, Folker, Wilke, Andreas, Huson, Daniel H

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A RESTful API for accessing microbial community data for MG-RAST von Wilke, Andreas, Bischof, Jared, Harrison, Travis, Brettin, Tom, D'Souza, Mark, Gerlach, Wolfgang, Matthews, Hunter, Paczian, Tobias, Wilkening, Jared, Glass, Elizabeth M, Desai, Narayan, Meyer, Folker

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Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro von Le-Trilling, Vu Thuy Khanh, Mennerich, Denise, Schuler, Corinna, Sakson, Roman, Lill, Julia K, Kasarla, Siva Swapna, Kopczynski, Dominik, Loroch, Stefan, Flores-Martinez, Yulia, Katschinski, Benjamin, Wohlgemuth, Kerstin, Gunzer, Matthias, Meyer, Folker, Phapale, Prasad, Dittmer, Ulf, Sickmann, Albert, Trilling, Mirko

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Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil von Howe, Adina, Yang, Fan, Williams, Ryan J, Meyer, Folker, Hofmockel, Kirsten S

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Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5 von Bormann, Maren, Brochhagen, Leonie, Alt, Mira, Otte, Mona, Thümmler, Laura, van de Sand, Lukas, Kraiselburd, Ivana, Thomas, Alexander, Gosch, Jule, Braß, Peer, Ciesek, Sandra, Widera, Marek, Dolff, Sebastian, Dittmer, Ulf, Witzke, Oliver, Meyer, Folker, Lindemann, Monika, Schönfeld, Andreas, Rohn, Hana, Krawczyk, Adalbert

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