Structure and Biosynthetic Gene Cluster of Sulfated Capsular Polysaccharide from the Marine Bacterium Vibrio sp. KMM 8419 von Kokoulin, Maxim S, Savicheva, Yulia V, Otstavnykh, Nadezhda Y, Kurilenko, Valeria V, Meleshko, Dmitry A, Isaeva, Marina P

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Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment von Chng, Kern Rei, Li, Chenhao, Bertrand, Denis, Ng, Amanda Hui Qi, Kwah, Junmei Samantha, Low, Hwee Meng, Tong, Chengxuan, Natrajan, Maanasa, Zhang, Michael Hongjie, Xu, Licheng, Ko, Karrie Kwan Ki, Ho, Eliza Xin Pei, Av-Shalom, Tamar V., Teo, Jeanette Woon Pei, Khor, Chiea Chuen, Chen, Swaine L., Mason, Christopher E., Ng, Oon Tek, Marimuthu, Kalisvar, Ang, Brenda, Nagarajan, Niranjan

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metaSPAdes: a new versatile metagenomic assembler von Nurk, Sergey, Meleshko, Dmitry, Korobeynikov, Anton, Pevzner, Pavel A

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coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies von Meleshko, Dmitry, Hajirasouliha, Iman, Korobeynikov, Anton

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Benchmarking State-of-the-Art Approaches for Norovirus Genome Assembly in Metagenome Sample von Meleshko, Dmitry, Korobeynikov, Anton

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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions von Butler, Daniel, Mozsary, Christopher, Meydan, Cem, Foox, Jonathan, Rosiene, Joel, Shaiber, Alon, Danko, David, Afshinnekoo, Ebrahim, MacKay, Matthew, Sedlazeck, Fritz J., Ivanov, Nikolay A., Sierra, Maria, Pohle, Diana, Zietz, Michael, Gisladottir, Undina, Ramlall, Vijendra, Sholle, Evan T., Schenck, Edward J., Westover, Craig D., Hassan, Ciaran, Ryon, Krista, Young, Benjamin, Bhattacharya, Chandrima, Ng, Dianna L., Granados, Andrea C., Santos, Yale A., Servellita, Venice, Federman, Scot, Ruggiero, Phyllis, Fungtammasan, Arkarachai, Chin, Chen-Shan, Pearson, Nathaniel M., Langhorst, Bradley W., Tanner, Nathan A., Kim, Youngmi, Reeves, Jason W., Hether, Tyler D., Warren, Sarah E., Bailey, Michael, Gawrys, Justyna, Meleshko, Dmitry, Xu, Dong, Couto-Rodriguez, Mara, Nagy-Szakal, Dorottya, Barrows, Joseph, Wells, Heather, O’Hara, Niamh B., Rosenfeld, Jeffrey A., Chen, Ying, Steel, Peter A. D., Shemesh, Amos J., Xiang, Jenny, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Iftner, Angelika, Bezdan, Daniela, Sanchez, Elizabeth, Campion, Thomas R., Sipley, John, Cong, Lin, Craney, Arryn, Velu, Priya, Melnick, Ari M., Shapira, Sagi, Hajirasouliha, Iman, Borczuk, Alain, Iftner, Thomas, Salvatore, Mirella, Loda, Massimo, Westblade, Lars F., Cushing, Melissa, Wu, Shixiu, Levy, Shawn, Chiu, Charles, Schwartz, Robert E., Tatonetti, Nicholas, Rennert, Hanna, Imielinski, Marcin, Mason, Christopher E.

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A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion von Khosravi, Pegah, Lysandrou, Maria, Eljalby, Mahmoud, Li, Qianzi, Kazemi, Ehsan, Zisimopoulos, Pantelis, Sigaras, Alexandros, Brendel, Matthew, Barnes, Josue, Ricketts, Camir, Meleshko, Dmitry, Yat, Andy, McClure, Timothy D., Robinson, Brian D., Sboner, Andrea, Elemento, Olivier, Chughtai, Bilal, Hajirasouliha, Iman

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Efficient detection and assembly of non-reference DNA sequences with synthetic long reads von Meleshko, Dmitry, Yang, Rui, Marks, Patrick, Williams, Stephen, Hajirasouliha, Iman

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Cue: a deep-learning framework for structural variant discovery and genotyping von Popic, Victoria, Rohlicek, Chris, Cunial, Fabio, Hajirasouliha, Iman, Meleshko, Dmitry, Garimella, Kiran, Maheshwari, Anant

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Ariadne: synthetic long read deconvolution using assembly graphs von Mak, Lauren, Meleshko, Dmitry, Danko, David C, Barakzai, Waris N, Maharjan, Salil, Belchikov, Natan, Hajirasouliha, Iman

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Petabase-scale sequence alignment catalyses viral discovery von Edgar, Robert C., Taylor, Brie, Lin, Victor, Altman, Tomer, Barbera, Pierre, Meleshko, Dmitry, Lohr, Dan, Novakovsky, Gherman, Buchfink, Benjamin, Al-Shayeb, Basem, Banfield, Jillian F., de la Peña, Marcos, Korobeynikov, Anton, Chikhi, Rayan, Babaian, Artem

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Using SPAdes De Novo Assembler von Prjibelski, Andrey, Antipov, Dmitry, Meleshko, Dmitry, Lapidus, Alla, Korobeynikov, Anton

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cloudrna SP Ades : isoform assembly using bulk barcoded RNA sequencing data von Meleshko, Dmitry, Prjbelski, Andrey D, Raiko, Mikhail, Tomescu, Alexandru I, Tilgner, Hagen, Hajirasouliha, Iman

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Critical Assessment of Metagenome Interpretation: the second round of challenges von Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

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BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs von Meleshko, Dmitry, Mohimani, Hosein, Tracanna, Vittorio, Hajirasouliha, Iman, Medema, Marnix H, Korobeynikov, Anton, Pevzner, Pavel A

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Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics von Danko, David C, Meleshko, Dmitry, Bezdan, Daniela, Mason, Christopher, Hajirasouliha, Iman

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cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data von Meleshko, Dmitry, Prjbelski, Andrey D, Raiko, Mikhail, Tomescu, Alexandru I, Tilgner, Hagen, Hajirasouliha, Iman

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Clinical effectiveness and pharmacokinetics of gliflozin from the point of view of individual genetic characteristics: A review von Golovina, E L, Vaizova, O E, Meleshko, M V, Samoilova, I G, Podchinenova, D V, Borozinets, A A, Matveeva, M V, Kudlay, D A

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Debris flows triggered from non-stationary glacier lake outbursts: the case of the Teztor Lake complex (Northern Tian Shan, Kyrgyzstan) von Erokhin, Sergey Aleksandrovich, Zaginaev, Vitalii Viktorovich, Meleshko, Anna Alexandrovna, Ruiz-Villanueva, Virginia, Petrakov, Dmitry Aleksandrovich, Chernomorets, Sergey Semenovich, Viskhadzhieva, Karina Saidovna, Tutubalina, Olga Valerjevna, Stoffel, Markus

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A comprehensive metagenomics framework to characterize organisms relevant for planetary protection von Danko, David C, Sierra, Maria A, Benardini, James N, Guan, Lisa, Wood, Jason M, Singh, Nitin, Seuylemezian, Arman, Butler, Daniel J, Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Venkateswaran, Kasthuri J, Mason, Christopher E

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