Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes von Galperin, Michael Y., Mekhedov, Sergei L., Puigbo, Pere, Smirnov, Sergey, Wolf, Yuri I., Rigden, Daniel J.

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Mitochondria-rough-ER contacts in the liver regulate systemic lipid homeostasis von Anastasia, Irene, Ilacqua, Nicolò, Raimondi, Andrea, Lemieux, Philippe, Ghandehari-Alavijeh, Rana, Faure, Guilhem, Mekhedov, Sergei L., Williams, Kevin J., Caicci, Federico, Valle, Giorgio, Giacomello, Marta, Quiroga, Ariel D., Lehner, Richard, Miksis, Michael J., Toth, Katalin, de Aguiar Vallim, Thomas Q., Koonin, Eugene V., Scorrano, Luca, Pellegrini, Luca

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Myosin-driven transport network in plants von Kurth, Elizabeth G., Peremyslov, Valera V., Turner, Hannah L., Makarova, Kira S., Iranzo, Jaime, Mekhedov, Sergei L., Koonin, Eugene V., Dolja, Valerian V.

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The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis von Mekhedov, Sergei L, Makarova, Kira S, Koonin, Eugene V

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Mammalian retrovirus-like protein PEG10 packages its own mRNA and can be pseudotyped for mRNA delivery von Segel, Michael, Lash, Blake, Song, Jingwei, Ladha, Alim, Liu, Catherine C., Jin, Xin, Mekhedov, Sergei L., Macrae, Rhiannon K., Koonin, Eugene V., Zhang, Feng

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Selection for short introns in highly expressed genes von Kondrashov, Fyodor A, Castillo-Davis, Cristian I, Mekhedov, Sergei L, Hartl, Daniel L, Koonin, Eugene V

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The COG database: an updated version includes eukaryotes von Tatusov, Roman L, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Kiryutin, Boris, Koonin, Eugene V, Krylov, Dmitri M, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, Rao, B Sridhar, Smirnov, Sergei, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, Rao, B Sridhar, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Prevalence of intron gain over intron loss in the evolution of paralogous gene families von Babenko, Vladimir N., Rogozin, Igor B., Mekhedov, Sergei L., Koonin, Eugene V.

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Gibberellin promotes histone H1 kinase activity and the expression of cdc2 and cyclin genes during the induction of rapid growth in deepwater rice internodes von Sauter, Margret, Mekhedov, Sergei L., Kende, Hans

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Submergence enhances expression of a gene encoding 1-aminocyclopropane-1-carboxylate oxidase in deepwater rice [Oryza sativa] von Mekhedov, S.L. (Michigan State Univ., East Lansing (USA)), Kende, H

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Gene dispensability in yeast and worm and phyletic patterns of the respective KOGs von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Variation of amino-acid substitution rates among KOGs von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Assignment of proteins from each of the seven analyzed eukaryotic genomes to KOGs with different numbers of species and to LSEs von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Correspondence between eukaryotic and prokaryotic orthologous gene sets von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Functional breakdown of the KOGs von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Distribution of the KOGs by the number of paralogs in each of the analyzed eukaryotic genomes von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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Parsimonious scenarios of loss and emergence of genes (KOGs) in eukaryotic evolution von Koonin, Eugene V, Fedorova, Natalie D, Jackson, John D, Jacobs, Aviva R, Krylov, Dmitri M, Makarova, Kira S, Mazumder, Raja, Mekhedov, Sergei L, Nikolskaya, Anastasia N, B Sridhar Rao, Rogozin, Igor B, Smirnov, Sergei, Sorokin, Alexander V, Sverdlov, Alexander V, Vasudevan, Sona, Wolf, Yuri I, Yin, Jodie J, Natale, Darren A

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