DNA methylation: roles in mammalian development von Smith, Zachary D., Meissner, Alexander

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Circadian Entrainment Triggers Maturation of Human In Vitro Islets von Alvarez-Dominguez, Juan R., Donaghey, Julie, Rasouli, Niloofar, Kenty, Jennifer H.R., Helman, Aharon, Charlton, Jocelyn, Straubhaar, Juerg R., Meissner, Alexander, Melton, Douglas A.

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Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling von Meissner, Alexander, Gu, Hongcang, Smith, Zachary D, Bock, Christoph, Boyle, Patrick, Gnirke, Andreas

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Integrative analysis of 111 reference human epigenomes von Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, John W., Schultz, Matthew D., Ward, Lucas D., Sarkar, Abhishek, Quon, Gerald, Sandstrom, Richard S., Eaton, Matthew L., Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Coarfa, Cristian, Harris, R. Alan, Shoresh, Noam, Epstein, Charles B., Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R. David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J., Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K., Hansen, R. Scott, Kaul, Rajinder, Sabo, Peter J., Bansal, Mukul S., Carles, Annaick, Dixon, Jesse R., Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Elliott, GiNell, Mercer, Tim R., Neph, Shane J., Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C., Siebenthall, Kyle T., Sinnott-Armstrong, Nicholas A., Stevens, Michael, Thurman, Robert E., Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E., Boyer, Laurie A., De Jager, Philip L., Farnham, Peggy J., Fisher, Susan J., Haussler, David, Jones, Steven J. M., Li, Wei, Marra, Marco A., McManus, Michael T., Sunyaev, Shamil, Thomson, James A., Tlsty, Thea D., Tsai, Li-Huei, Wang, Wei, Waterland, Robert A., Zhang, Michael Q., Chadwick, Lisa H., Bernstein, Bradley E., Costello, Joseph F., Ecker, Joseph R., Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A., Wang, Ting, Kellis, Manolis

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Unblending of Transcriptional Condensates in Human Repeat Expansion Disease von Basu, Shaon, Mackowiak, Sebastian D., Niskanen, Henri, Knezevic, Dora, Asimi, Vahid, Grosswendt, Stefanie, Geertsema, Hylkje, Ali, Salaheddine, Jerković, Ivana, Ewers, Helge, Mundlos, Stefan, Meissner, Alexander, Ibrahim, Daniel M., Hnisz, Denes

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Transcription factor binding dynamics during human ES cell differentiation von Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander

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Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages von Andergassen, Daniel, Smith, Zachary D, Kretzmer, Helene, Rinn, John L, Meissner, Alexander

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Charting a dynamic DNA methylation landscape of the human genome von Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Philip L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander

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Erosion of Dosage Compensation Impacts Human iPSC Disease Modeling von Mekhoubad, Shila, Bock, Christoph, de Boer, A. Sophie, Kiskinis, Evangelos, Meissner, Alexander, Eggan, Kevin

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Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer von Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander

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Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming von Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander

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Proliferation-Dependent Alterations of the DNA Methylation Landscape Underlie Hematopoietic Stem Cell Aging von Beerman, Isabel, Bock, Christoph, Garrison, Brian S., Smith, Zachary D., Gu, Hongcang, Meissner, Alexander, Rossi, Derrick J.

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DNA methylation signatures link prenatal famine exposure to growth and metabolism von Tobi, Elmar W., Goeman, Jelle J., Monajemi, Ramin, Gu, Hongcang, Putter, Hein, Zhang, Yanju, Slieker, Roderick C., Stok, Arthur P., Thijssen, Peter E., Müller, Fabian, van Zwet, Erik W., Bock, Christoph, Meissner, Alexander, Lumey, L. H., Eline Slagboom, P., Heijmans, Bastiaan T.

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Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells von Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J, Clement, Kendell, Tsankov, Alexander M, Akopian, Veronika, Gifford, Casey A, Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q, Mallard, William, Joung, J Keith, Rinn, John L, Gnirke, Andreas, Meissner, Alexander

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A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs von Choi, Jiho, Lee, Soohyun, Mallard, William, Clement, Kendell, Tagliazucchi, Guidantonio Malagoli, Lim, Hotae, Choi, In Young, Ferrari, Francesco, Tsankov, Alexander M, Pop, Ramona, Lee, Gabsang, Rinn, John L, Meissner, Alexander, Park, Peter J, Hochedlinger, Konrad

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lincRNAs act in the circuitry controlling pluripotency and differentiation von Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstrom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric S.

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Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines von Bock, Christoph, Kiskinis, Evangelos, Verstappen, Griet, Gu, Hongcang, Boulting, Gabriella, Smith, Zachary D., Ziller, Michael, Croft, Gist F., Amoroso, Mackenzie W., Oakley, Derek H., Gnirke, Andreas, Eggan, Kevin, Meissner, Alexander

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DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells von Bock, Christoph, Beerman, Isabel, Lien, Wen-Hui, Smith, Zachary D., Gu, Hongcang, Boyle, Patrick, Gnirke, Andreas, Fuchs, Elaine, Rossi, Derrick J., Meissner, Alexander

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Dnmt1 has de novo activity targeted to transposable elements von Haggerty, Chuck, Kretzmer, Helene, Riemenschneider, Christina, Kumar, Abhishek Sampath, Mattei, Alexandra L., Bailly, Nina, Gottfreund, Judith, Giesselmann, Pay, Weigert, Raha, Brändl, Björn, Giehr, Pascal, Buschow, René, Galonska, Christina, von Meyenn, Ferdinand, Pappalardi, Melissa B., McCabe, Michael T., Wittler, Lars, Giesecke-Thiel, Claudia, Mielke, Thorsten, Meierhofer, David, Timmermann, Bernd, Müller, Franz-Josef, Walter, Jörn, Meissner, Alexander

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Quantitative comparison of genome-wide DNA methylation mapping technologies von Brinkman, Arie B, Meissner, Alexander, Gu, Hongcang, Müller, Fabian, Bock, Christoph, Jäger, Natalie, Tomazou, Eleni M, Stunnenberg, Hendrik G, Gnirke, Andreas, Simmer, Femke

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