The gene regulatory network of mESC differentiation: a benchmark for reverse engineering methods von Meisig, Johannes, Blüthgen, Nils

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The Two Active X Chromosomes in Female ESCs Block Exit from the Pluripotent State by Modulating the ESC Signaling Network von Schulz, Edda G., Meisig, Johannes, Nakamura, Tomonori, Okamoto, Ikuhiro, Sieber, Anja, Picard, Christel, Borensztein, Maud, Saitou, Mitinori, Blüthgen, Nils, Heard, Edith

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Stem Cell‐Derived Immature Human Dorsal Root Ganglia Neurons to Identify Peripheral Neurotoxicants von Hoelting, Lisa, Klima, Stefanie, Karreman, Christiaan, Grinberg, Marianna, Meisig, Johannes, Henry, Margit, Rotshteyn, Tamara, Rahnenführer, Jörg, Blüthgen, Nils, Sachinidis, Agapios, Waldmann, Tanja, Leist, Marcel

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An immediate–late gene expression module decodes ERK signal duration von Uhlitz, Florian, Sieber, Anja, Wyler, Emanuel, Fritsche‐Guenther, Raphaela, Meisig, Johannes, Landthaler, Markus, Klinger, Bertram, Blüthgen, Nils

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A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors von Rempel, Eugen, Hoelting, Lisa, Waldmann, Tanja, Balmer, Nina V., Schildknecht, Stefan, Grinberg, Marianna, Das Gaspar, John Antony, Shinde, Vaibhav, Stöber, Regina, Marchan, Rosemarie, van Thriel, Christoph, Liebing, Julia, Meisig, Johannes, Blüthgen, Nils, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Leist, Marcel

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Development of a neural rosette formation assay (RoFA) to identify neurodevelopmental toxicants and to characterize their transcriptome disturbances von Dreser, Nadine, Madjar, Katrin, Holzer, Anna-Katharina, Kapitza, Marion, Scholz, Christopher, Kranaster, Petra, Gutbier, Simon, Klima, Stefanie, Kolb, David, Dietz, Christian, Trefzer, Timo, Meisig, Johannes, van Thriel, Christoph, Henry, Margit, Berthold, Michael R., Blüthgen, Nils, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Waldmann, Tanja, Leist, Marcel

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An immediate–late gene expression module decodes ERK signal duration von Uhlitz, Florian, Sieber, Anja, Wyler, Emanuel, Fritsche‐Guenther, Raphaela, Meisig, Johannes, Landthaler, Markus, Klinger, Bertram, Blüthgen, Nils

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Tracking in vivo dynamics of NK cells transferred in patients undergoing stem cell transplantation von Killig, Monica, Friedrichs, Birte, Meisig, Johannes, Gentilini, Chiara, Blüthgen, Nils, Loddenkemper, Christoph, Labopin, Myriam, Basara, Nadezda, Pfrepper, Christian, Niederwieser, Dietger W., Uharek, Lutz, Romagnani, Chiara

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High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation von Seidel, Florian, Cherianidou, Anna, Kappenberg, Franziska, Marta, Miriam, Dreser, Nadine, Blum, Jonathan, Waldmann, Tanja, Blüthgen, Nils, Meisig, Johannes, Madjar, Katrin, Henry, Margit, Rotshteyn, Tamara, Scholtz-Illigens, Andreas, Marchan, Rosemarie, Edlund, Karolina, Leist, Marcel, Rahnenführer, Jörg, Sachinidis, Agapios, Hengstler, Jan Georg

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Exponential signaling gain at the receptor level enhances signal-to-noise ratio in bacterial chemotaxis von Neumann, Silke, Løvdok, Linda, Bentele, Kajetan, Meisig, Johannes, Ullner, Ekkehard, Paldy, Ferencz S, Sourjik, Victor, Kollmann, Markus

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The gene regulatory network of mESC differentiation: a benchmark for reverse engineering methods von Meisig, Johannes, Blüthgen, Nils

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Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests von Shinde, Vaibhav, Hoelting, Lisa, Srinivasan, Sureshkumar Perumal, Meisig, Johannes, Meganathan, Kesavan, Jagtap, Smita, Grinberg, Marianna, Liebing, Julia, Bluethgen, Nils, Rahnenführer, Jörg, Rempel, Eugen, Stoeber, Regina, Schildknecht, Stefan, Förster, Sunniva, Godoy, Patricio, van Thriel, Christoph, Gaspar, John Antonydas, Hescheler, Jürgen, Waldmann, Tanja, Hengstler, Jan G., Leist, Marcel, Sachinidis, Agapios

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Subcellular mRNA kinetic modeling reveals nuclear retention as rate-limiting von Steinbrecht, David, Minia, Igor, Milek, Miha, Meisig, Johannes, Blüthgen, Nils, Landthaler, Markus

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Spatial partitioning of the regulatory landscape of the X-inactivation centre von Nora, Elphège P., Lajoie, Bryan R., Schulz, Edda G., Giorgetti, Luca, Okamoto, Ikuhiro, Servant, Nicolas, Piolot, Tristan, van Berkum, Nynke L., Meisig, Johannes, Sedat, John, Gribnau, Joost, Barillot, Emmanuel, Blüthgen, Nils, Dekker, Job, Heard, Edith

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RORγt+ Innate Lymphoid Cells Acquire a Proinflammatory Program upon Engagement of the Activating Receptor NKp44 von Glatzer, Timor, Killig, Monica, Meisig, Johannes, Ommert, Isabelle, Luetke-Eversloh, Merlin, Babic, Marina, Paclik, Daniela, Blüthgen, Nils, Seidl, Rainer, Seifarth, Claudia, Gröne, Jörn, Lenarz, Minoo, Stölzel, Katharina, Fugmann, Dominik, Porgador, Angel, Hauser, Anja, Karlas, Alexander, Romagnani, Chiara

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Kinetic modeling of stem cell transcriptome dynamics to identify regulatory modules of normal and disturbed neuroectodermal differentiation von Meisig, Johannes, Dreser, Nadine, Kapitza, Marion, Henry, Margit, Rotshteyn, Tamara, Rahnenführer, Jörg, Hengstler, Jan G, Sachinidis, Agapios, Waldmann, Tanja, Leist, Marcel, Blüthgen, Nils

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Classification of Developmental Toxicants in a Human iPSC Transcriptomics-Based Test von Cherianidou, Anna, Seidel, Florian, Kappenberg, Franziska, Dreser, Nadine, Blum, Jonathan, Waldmann, Tanja, Blüthgen, Nils, Meisig, Johannes, Madjar, Katrin, Henry, Margit, Rotshteyn, Tamara, Marchan, Rosemarie, Edlund, Karolina, Leist, Marcel, Rahnenführer, Jörg, Sachinidis, Agapios, Hengstler, Jan G.

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Grouping of histone deacetylase inhibitors and other toxicants disturbing neural crest migration by transcriptional profiling von Dreser, Nadine, Zimmer, Bastian, Dietz, Christian, Sügis, Elena, Pallocca, Giorgia, Nyffeler, Johanna, Meisig, Johannes, Blüthgen, Nils, Berthold, Michael R., Waldmann, Tanja, Leist, Marcel

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Comparison of a teratogenic transcriptome-based predictive test based on human embryonic versus inducible pluripotent stem cells von Shinde, Vaibhav, Perumal Srinivasan, Sureshkumar, Henry, Margit, Rotshteyn, Tamara, Hescheler, Jürgen, Rahnenführer, Jörg, Grinberg, Marianna, Meisig, Johannes, Blüthgen, Nils, Waldmann, Tanja, Leist, Marcel, Hengstler, Jan Georg, Sachinidis, Agapios

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Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Tox sub(ukn) and STOP-Tox sub(uk... von Shinde, Vaibhav, Hoelting, Lisa, Srinivasan, Sureshkumar Perumal, Meisig, Johannes, Meganathan, Kesavan, Jagtap, Smita, Grinberg, Marianna, Liebing, Julia, Bluethgen, Nils, Rahnenfuehrer, Jorg, Rempel, Eugen, Stoeber, Regina, Schildknecht, Stefan, ster, Sunniva, Godoy, Patricio, Thriel, Christoph, Gaspar, John Antonydas, Hescheler, Juergen, Waldmann, Tanja, Hengstler, Jan G, Leist, Marcel, Sachinidis, Agapios

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