DNA methylation: roles in mammalian development von Smith, Zachary D., Meissner, Alexander

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Transcription factor binding dynamics during human ES cell differentiation von Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander

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Circadian Entrainment Triggers Maturation of Human In Vitro Islets von Alvarez-Dominguez, Juan R., Donaghey, Julie, Rasouli, Niloofar, Kenty, Jennifer H.R., Helman, Aharon, Charlton, Jocelyn, Straubhaar, Juerg R., Meissner, Alexander, Melton, Douglas A.

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Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells von Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J, Clement, Kendell, Tsankov, Alexander M, Akopian, Veronika, Gifford, Casey A, Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q, Mallard, William, Joung, J Keith, Rinn, John L, Gnirke, Andreas, Meissner, Alexander

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Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling von Gu, Hongcang, Smith, Zachary D, Bock, Christoph, Boyle, Patrick, Gnirke, Andreas, Meissner, Alexander

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Integrative analysis of 111 reference human epigenomes von Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, John W., Schultz, Matthew D., Ward, Lucas D., Sarkar, Abhishek, Quon, Gerald, Sandstrom, Richard S., Eaton, Matthew L., Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Coarfa, Cristian, Harris, R. Alan, Shoresh, Noam, Epstein, Charles B., Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R. David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J., Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K., Hansen, R. Scott, Kaul, Rajinder, Sabo, Peter J., Bansal, Mukul S., Carles, Annaick, Dixon, Jesse R., Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Elliott, GiNell, Mercer, Tim R., Neph, Shane J., Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C., Siebenthall, Kyle T., Sinnott-Armstrong, Nicholas A., Stevens, Michael, Thurman, Robert E., Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E., Boyer, Laurie A., De Jager, Philip L., Farnham, Peggy J., Fisher, Susan J., Haussler, David, Jones, Steven J. M., Li, Wei, Marra, Marco A., McManus, Michael T., Sunyaev, Shamil, Thomson, James A., Tlsty, Thea D., Tsai, Li-Huei, Wang, Wei, Waterland, Robert A., Zhang, Michael Q., Chadwick, Lisa H., Bernstein, Bradley E., Costello, Joseph F., Ecker, Joseph R., Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A., Wang, Ting, Kellis, Manolis

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A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs von Choi, Jiho, Lee, Soohyun, Mallard, William, Clement, Kendell, Tagliazucchi, Guidantonio Malagoli, Lim, Hotae, Choi, In Young, Ferrari, Francesco, Tsankov, Alexander M, Pop, Ramona, Lee, Gabsang, Rinn, John L, Meissner, Alexander, Park, Peter J, Hochedlinger, Konrad

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Unblending of Transcriptional Condensates in Human Repeat Expansion Disease von Basu, Shaon, Mackowiak, Sebastian D., Niskanen, Henri, Knezevic, Dora, Asimi, Vahid, Grosswendt, Stefanie, Geertsema, Hylkje, Ali, Salaheddine, Jerković, Ivana, Ewers, Helge, Mundlos, Stefan, Meissner, Alexander, Ibrahim, Daniel M., Hnisz, Denes

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Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages von Andergassen, Daniel, Smith, Zachary D, Kretzmer, Helene, Rinn, John L, Meissner, Alexander

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Charting a dynamic DNA methylation landscape of the human genome von Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Philip L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander

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Erosion of Dosage Compensation Impacts Human iPSC Disease Modeling von Mekhoubad, Shila, Bock, Christoph, de Boer, A. Sophie, Kiskinis, Evangelos, Meissner, Alexander, Eggan, Kevin

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Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer von Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander

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Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming von Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander

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A comparison of non-integrating reprogramming methods von Schlaeger, Thorsten M, Daheron, Laurence, Brickler, Thomas R, Entwisle, Samuel, Chan, Karrie, Cianci, Amelia, DeVine, Alexander, Ettenger, Andrew, Fitzgerald, Kelly, Godfrey, Michelle, Gupta, Dipti, McPherson, Jade, Malwadkar, Prerana, Gupta, Manav, Bell, Blair, Doi, Akiko, Jung, Namyoung, Li, Xin, Lynes, Maureen S, Brookes, Emily, Cherry, Anne B C, Demirbas, Didem, Tsankov, Alexander M, Zon, Leonard I, Rubin, Lee L, Feinberg, Andrew P, Meissner, Alexander, Cowan, Chad A, Daley, George Q

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Proliferation-Dependent Alterations of the DNA Methylation Landscape Underlie Hematopoietic Stem Cell Aging von Beerman, Isabel, Bock, Christoph, Garrison, Brian S., Smith, Zachary D., Gu, Hongcang, Meissner, Alexander, Rossi, Derrick J.

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Epigenetic modifications in pluripotent and differentiated cells von Meissner, Alexander

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DNA methylation signatures link prenatal famine exposure to growth and metabolism von Tobi, Elmar W., Goeman, Jelle J., Monajemi, Ramin, Gu, Hongcang, Putter, Hein, Zhang, Yanju, Slieker, Roderick C., Stok, Arthur P., Thijssen, Peter E., Müller, Fabian, van Zwet, Erik W., Bock, Christoph, Meissner, Alexander, Lumey, L. H., Eline Slagboom, P., Heijmans, Bastiaan T.

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A qPCR ScoreCard quantifies the differentiation potential of human pluripotent stem cells von Tsankov, Alexander M, Akopian, Veronika, Pop, Ramona, Chetty, Sundari, Gifford, Casey A, Daheron, Laurence, Tsankova, Nadejda M, Meissner, Alexander

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Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells von Gifford, Casey A., Ziller, Michael J., Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R., Shishkin, Alexander A., Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael, Fostel, Jennifer L., Holmes, Laurie, Meldrim, Jim, Guttman, Mitchell, Epstein, Charles, Park, Hongkun, Kohlbacher, Oliver, Rinn, John, Gnirke, Andreas, Lander, Eric S., Bernstein, Bradley E., Meissner, Alexander

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lincRNAs act in the circuitry controlling pluripotency and differentiation von Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstrom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric S.

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