Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways von Medvedev, Kirill E, Kinch, Lisa N, Schaeffer, R Dustin, Grishin, Nick V

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ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 von Schaeffer, R Dustin, Zhang, Jing, Medvedev, Kirill E, Kinch, Lisa N, Cong, Qian, Grishin, Nick V

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ECOD: integrating classifications of protein domains from experimental and predicted structures von Schaeffer, R Dustin, Medvedev, Kirill E, Andreeva, Antonina, Chuguransky, Sara Rocio, Pinto, Beatriz Lazaro, Zhang, Jing, Cong, Qian, Bateman, Alex, Grishin, Nick V

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Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains von Medvedev, Kirill E., Schaeffer, R. Dustin, Chen, Kenneth S., Grishin, Nick V.

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Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands von Medvedev, Kirill E., Zhang, Jing, Schaeffer, R. Dustin, Kinch, Lisa N., Cong, Qian, Grishin, Nick V.

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Integrated Molecular Analysis Reveals 2 Distinct Subtypes of Pure Seminoma of the Testis von Medvedev, Kirill E, Savelyeva, Anna V, Chen, Kenneth S, Bagrodia, Aditya, Jia, Liwei, Grishin, Nick V

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Completeness and Consistency in Structural Domain Classifications von Schaeffer, R. Dustin, Kinch, Lisa N, Pei, Jimin, Medvedev, Kirill E, Grishin, Nick V

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ECOD: identification of distant homology among multidomain and transmembrane domain proteins von Schaeffer, R Dustin, Kinch, Lisa, Medvedev, Kirill E, Pei, Jimin, Cheng, Hua, Grishin, Nick

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DisEnrich: database of enriched regions in human dark proteome von Medvedev, Kirill E, Pei, Jimin, Grishin, Nick V

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DrugDomain: The evolutionary context of drugs and small molecules bound to domains von Medvedev, Kirill E., Schaeffer, R. Dustin, Grishin, Nick V.

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A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit von Medvedev, Kirill E., Kinch, Lisa N., Dustin Schaeffer, R., Pei, Jimin, Grishin, Nick V.

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Pathogenic mutation hotspots in protein kinase domain structure von Medvedev, Kirill E., Schaeffer, R. Dustin, Pei, Jimin, Grishin, Nick V.

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Recent advances suggest increased influence of selective pressure in allostery von Bhat, Archana S, Dustin Schaeffer, Richard, Kinch, Lisa, Medvedev, Kirill E, Grishin, Nick V

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Functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold von Medvedev, Kirill E., Kinch, Lisa N., Grishin, Nick V.

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Seminoma subtypes differ in the organization and functional state of the immune microenvironment von Savelyeva, Anna V., Medvedev, Kirill E.

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Deep Learning for Subtypes Identification of Pure Seminoma of the Testis von Medvedev, Kirill E, Acosta, Paul H, Jia, Liwei, Grishin, Nick V

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Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species von Medvedev, Kirill E, Alemasov, Nikolay A, Vorobjev, Yuri N, Boldyreva, Elena V, Kolchanov, Nikolay A, Afonnikov, Dmitry A

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Insights Into Molecular Relationship of Prostate Cancers with Intratumor Heterogeneous Morphology: A Molecular Analysis of 5 Cases von Shen, Daniel L, Choi, Jihee, Medvedev, Kirill E, Costa, Daniel N, Jia, Liwei

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Rossmann-Like Proteins Function and Evolution Analysis of a Fifth of the Protein World von Medvedev, Kirill E., Kinch, Lisa N., Grishin, Nick V.

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The Potential of Single Cell RNA-Sequencing Data for the Prediction of Gastric Cancer Serum Biomarkers von Medvedev, Kirill E., Savelyeva, Anna V., Bagrodia, Aditya, Grishin, Nick V.

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