Coming of age: ten years of next-generation sequencing technologies von Goodwin, Sara, McPherson, John D., McCombie, W. Richard

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Distinct routes of lineage development reshape the human blood hierarchy across ontogeny von Notta, Faiyaz, Zandi, Sasan, Takayama, Naoya, Dobson, Stephanie, Gan, Olga I., Wilson, Gavin, Kaufmann, Kerstin B., McLeod, Jessica, Laurenti, Elisa, Dunant, Cyrille F., McPherson, John D., Stein, Lincoln D., Dror, Yigal, Dick, John E.

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Next-Generation Sequencing Technologies von McCombie, W Richard, McPherson, John D, Mardis, Elaine R

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Next-generation gap von McPherson, John D

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Robust global microRNA expression profiling using next-generation sequencing technologies von Tam, Shirley, de Borja, Richard, Tsao, Ming-Sound, McPherson, John D

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Spatial genomic heterogeneity within localized, multifocal prostate cancer von Boutros, Paul C, Fraser, Michael, Harding, Nicholas J, de Borja, Richard, Trudel, Dominique, Lalonde, Emilie, Meng, Alice, Hennings-Yeomans, Pablo H, McPherson, Andrew, Sabelnykova, Veronica Y, Zia, Amin, Fox, Natalie S, Livingstone, Julie, Shiah, Yu-Jia, Wang, Jianxin, Beck, Timothy A, Have, Cherry L, Chong, Taryne, Sam, Michelle, Johns, Jeremy, Timms, Lee, Buchner, Nicholas, Wong, Ada, Watson, John D, Simmons, Trent T, P'ng, Christine, Zafarana, Gaetano, Nguyen, Francis, Luo, Xuemei, Chu, Kenneth C, Prokopec, Stephenie D, Sykes, Jenna, Dal Pra, Alan, Berlin, Alejandro, Brown, Andrew, Chan-Seng-Yue, Michelle A, Yousif, Fouad, Denroche, Robert E, Chong, Lauren C, Chen, Gregory M, Jung, Esther, Fung, Clement, Starmans, Maud H W, Chen, Hanbo, Govind, Shaylan K, Hawley, James, D'Costa, Alister, Pintilie, Melania, Waggott, Daryl, Hach, Faraz, Lambin, Philippe, Muthuswamy, Lakshmi B, Cooper, Colin, Eeles, Rosalind, Neal, David, Tetu, Bernard, Sahinalp, Cenk, Stein, Lincoln D, Fleshner, Neil, Shah, Sohrab P, Collins, Colin C, Hudson, Thomas J, McPherson, John D, van der Kwast, Theodorus, Bristow, Robert G

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Diverse EGFR Exon 20 Insertions and Co-Occurring Molecular Alterations Identified by Comprehensive Genomic Profiling of NSCLC von Riess, Jonathan W., Gandara, David R., Frampton, Garrett M., Madison, Russell, Peled, Nir, Bufill, Jose A., Dy, Grace K., Ou, Sai-Hong Ignatius, Stephens, Philip J., McPherson, John D., Lara, Primo N., Burich, Rebekah A., Ross, Jeffrey S., Miller, Vincent A., Ali, Siraj M., Mack, Philip C., Schrock, Alexa B.

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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line von Nattestad, Maria, Goodwin, Sara, Ng, Karen, Baslan, Timour, Sedlazeck, Fritz J, Rescheneder, Philipp, Garvin, Tyler, Fang, Han, Gurtowski, James, Hutton, Elizabeth, Tseng, Elizabeth, Chin, Chen-Shan, Beck, Timothy, Sundaravadanam, Yogi, Kramer, Melissa, Antoniou, Eric, McPherson, John D, Hicks, James, McCombie, W Richard, Schatz, Michael C

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Tracing the origins of relapse in acute myeloid leukaemia to stem cells von Shlush, Liran I., Mitchell, Amanda, Heisler, Lawrence, Abelson, Sagi, Ng, Stanley W. K., Trotman-Grant, Aaron, Medeiros, Jessie J. F., Rao-Bhatia, Abilasha, Jaciw-Zurakowsky, Ivana, Marke, Rene, McLeod, Jessica L., Doedens, Monica, Bader, Gary, Voisin, Veronique, Xu, ChangJiang, McPherson, John D., Hudson, Thomas J., Wang, Jean C. Y., Minden, Mark D., Dick, John E.

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Exome sequencing identifies distinct mutational patterns in liver fluke–related and non-infection-related bile duct cancers von Chan-on, Waraporn, Nairismägi, Maarja-Liisa, Ong, Choon Kiat, Lim, Weng Khong, Dima, Simona, Pairojkul, Chawalit, Lim, Kiat Hon, McPherson, John R, Cutcutache, Ioana, Heng, Hong Lee, Ooi, London, Chung, Alexander, Chow, Pierce, Cheow, Peng Chung, Lee, Ser Yee, Choo, Su Pin, Tan, Iain Bee Huat, Duda, Dan, Nastase, Anca, Myint, Swe Swe, Wong, Bernice Huimin, Gan, Anna, Rajasegaran, Vikneswari, Ng, Cedric Chuan Young, Nagarajan, Sanjanaa, Jusakul, Apinya, Zhang, Shenli, Vohra, Priya, Yu, Willie, Huang, DaChuan, Sithithaworn, Paiboon, Yongvanit, Puangrat, Wongkham, Sopit, Khuntikeo, Narong, Bhudhisawasdi, Vajaraphongsa, Popescu, Irinel, Rozen, Steven G, Tan, Patrick, Teh, Bin Tean

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Germline BRCA2 mutations drive prostate cancers with distinct evolutionary trajectories von Taylor, Renea A., Fraser, Michael, Livingstone, Julie, Espiritu, Shadrielle Melijah G., Thorne, Heather, Huang, Vincent, Lo, Winnie, Shiah, Yu-Jia, Yamaguchi, Takafumi N., Sliwinski, Ania, Horsburgh, Sheri, Meng, Alice, Heisler, Lawrence E., Yu, Nancy, Yousif, Fouad, Papargiris, Melissa, Lawrence, Mitchell G., Timms, Lee, Murphy, Declan G., Frydenberg, Mark, Hopkins, Julia F., Bolton, Damien, Clouston, David, McPherson, John D., van der Kwast, Theodorus, Boutros, Paul C., Risbridger, Gail P., Bristow, Robert G.

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Sensitive tumour detection and classification using plasma cell-free DNA methylomes von Shen, Shu Yi, Singhania, Rajat, Fehringer, Gordon, Chakravarthy, Ankur, Roehrl, Michael H. A., Chadwick, Dianne, Zuzarte, Philip C., Borgida, Ayelet, Wang, Ting Ting, Li, Tiantian, Kis, Olena, Zhao, Zhen, Spreafico, Anna, Medina, Tiago da Silva, Wang, Yadon, Roulois, David, Ettayebi, Ilias, Chen, Zhuo, Chow, Signy, Murphy, Tracy, Arruda, Andrea, O’Kane, Grainne M., Liu, Jessica, Mansour, Mark, McPherson, John D., O’Brien, Catherine, Leighl, Natasha, Bedard, Philippe L., Fleshner, Neil, Liu, Geoffrey, Minden, Mark D., Gallinger, Steven, Goldenberg, Anna, Pugh, Trevor J., Hoffman, Michael M., Bratman, Scott V., Hung, Rayjean J., De Carvalho, Daniel D.

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Prediction of acute myeloid leukaemia risk in healthy individuals von Abelson, Sagi, Collord, Grace, Ng, Stanley W. K., Weissbrod, Omer, Mendelson Cohen, Netta, Niemeyer, Elisabeth, Barda, Noam, Zuzarte, Philip C., Heisler, Lawrence, Sundaravadanam, Yogi, Luben, Robert, Hayat, Shabina, Wang, Ting Ting, Zhao, Zhen, Cirlan, Iulia, Pugh, Trevor J., Soave, David, Ng, Karen, Latimer, Calli, Hardy, Claire, Raine, Keiran, Jones, David, Hoult, Diana, Britten, Abigail, McPherson, John D., Johansson, Mattias, Mbabaali, Faridah, Eagles, Jenna, Miller, Jessica K., Pasternack, Danielle, Timms, Lee, Krzyzanowski, Paul, Awadalla, Philip, Costa, Rui, Segal, Eran, Bratman, Scott V., Beer, Philip, Behjati, Sam, Martincorena, Inigo, Wang, Jean C. Y., Bowles, Kristian M., Quirós, J. Ramón, Karakatsani, Anna, La Vecchia, Carlo, Trichopoulou, Antonia, Salamanca-Fernández, Elena, Huerta, José M., Barricarte, Aurelio, Travis, Ruth C., Tumino, Rosario, Masala, Giovanna, Boeing, Heiner, Panico, Salvatore, Kaaks, Rudolf, Krämer, Alwin, Sieri, Sabina, Riboli, Elio, Vineis, Paolo, Foll, Matthieu, McKay, James, Polidoro, Silvia, Sala, Núria, Khaw, Kay-Tee, Vermeulen, Roel, Campbell, Peter J., Papaemmanuil, Elli, Minden, Mark D., Tanay, Amos, Balicer, Ran D., Wareham, Nicholas J., Gerstung, Moritz, Dick, John E., Brennan, Paul, Vassiliou, George S., Shlush, Liran I.

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From "think like a vertex" to "think like a graph" von Tian, Yuanyuan, Balmin, Andrey, Corsten, Severin Andreas, Tatikonda, Shirish, McPherson, John

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A defining decade in DNA sequencing von McPherson, John D

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Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites von Baker, Allan J, Haddrath, Oliver, McPherson, John D, Cloutier, Alison

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Optimization of miRNA-seq data preprocessing von Tam, Shirley, Tsao, Ming-Sound, McPherson, John D

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Exome sequencing of liver fluke–associated cholangiocarcinoma von Ong, Choon Kiat, Subimerb, Chutima, Pairojkul, Chawalit, Wongkham, Sopit, Cutcutache, Ioana, Yu, Willie, McPherson, John R, Allen, George E, Ng, Cedric Chuan Young, Wong, Bernice Huimin, Myint, Swe Swe, Rajasegaran, Vikneswari, Heng, Hong Lee, Gan, Anna, Zang, Zhi Jiang, Wu, Yingting, Wu, Jeanie, Lee, Ming Hui, Huang, DaChuan, Ong, Pauline, Chan-on, Waraporn, Cao, Yun, Qian, Chao-Nan, Lim, Kiat Hon, Ooi, Aikseng, Dykema, Karl, Furge, Kyle, Kukongviriyapan, Veerapol, Sripa, Banchob, Wongkham, Chaisiri, Yongvanit, Puangrat, Futreal, P Andrew, Bhudhisawasdi, Vajarabhongsa, Rozen, Steve, Tan, Patrick, Teh, Bin Tean

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The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes von Angly, Florent E, Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A, Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A, Barott, Katie, Cottrell, Matthew T, Desnues, Christelle, Dinsdale, Elizabeth A, Furlan, Mike, Haynes, Matthew, Henn, Matthew R, Hu, Yongfei, Kirchman, David L, McDole, Tracey, McPherson, John D, Meyer, Folker, Miller, R Michael, Mundt, Egbert, Naviaux, Robert K, Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli, Rohwer, Forest

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Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia von Shlush, Liran I., Zandi, Sasan, Mitchell, Amanda, Chen, Weihsu Claire, Brandwein, Joseph M., Gupta, Vikas, Kennedy, James A., Schimmer, Aaron D., Schuh, Andre C., Yee, Karen W., McLeod, Jessica L., Doedens, Monica, Medeiros, Jessie J. F., Marke, Rene, Kim, Hyeoung Joon, Lee, Kwon, McPherson, John D., Hudson, Thomas J., Pan-Leukemia Gene Panel Consortium, The HALT, Brown, Andrew M. K., Yousif, Fouad, Trinh, Quang M., Stein, Lincoln D., Minden, Mark D., Wang, Jean C. Y., Dick, John E.

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