Dysregulated transcriptional responses to SARS-CoV-2 in the periphery von McClain, Micah T., Constantine, Florica J., Henao, Ricardo, Liu, Yiling, Tsalik, Ephraim L., Burke, Thomas W., Steinbrink, Julie M., Petzold, Elizabeth, Nicholson, Bradly P., Rolfe, Robert, Kraft, Bryan D., Kelly, Matthew S., Saban, Daniel R., Yu, Chen, Shen, Xiling, Ko, Emily M., Sempowski, Gregory D., Denny, Thomas N., Ginsburg, Geoffrey S., Woods, Christopher W.

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Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection von Huang, Yongsheng, Zaas, Aimee K, Rao, Arvind, Dobigeon, Nicolas, Woolf, Peter J, Veldman, Timothy, Øien, N Christine, McClain, Micah T, Varkey, Jay B, Nicholson, Bradley, Carin, Lawrence, Kingsmore, Stephen, Woods, Christopher W, Ginsburg, Geoffrey S, Hero, 3rd, Alfred O

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Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification von Sobel Leonard, Ashley, McClain, Micah T, Smith, Gavin J D, Wentworth, David E, Halpin, Rebecca A, Lin, Xudong, Ransier, Amy, Stockwell, Timothy B, Das, Suman R, Gilbert, Anthony S, Lambkin-Williams, Robert, Ginsburg, Geoffrey S, Woods, Christopher W, Koelle, Katia

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A host transcriptional signature for presymptomatic detection of infection in humans exposed to influenza H1N1 or H3N2 von Woods, Christopher W, McClain, Micah T, Chen, Minhua, Zaas, Aimee K, Nicholson, Bradly P, Varkey, Jay, Veldman, Timothy, Kingsmore, Stephen F, Huang, Yongsheng, Lambkin-Williams, Robert, Gilbert, Anthony G, Hero, 3rd, Alfred O, Ramsburg, Elizabeth, Glickman, Seth, Lucas, Joseph E, Carin, Lawrence, Ginsburg, Geoffrey S

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A comparison of host response strategies to distinguish bacterial and viral infection von Ross, Melissa, Henao, Ricardo, Burke, Thomas W, Ko, Emily R, McClain, Micah T, Ginsburg, Geoffrey S, Woods, Christopher W, Tsalik, Ephraim L

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Systematic comparison of published host gene expression signatures for bacterial/viral discrimination von Bodkin, Nicholas, Ross, Melissa, McClain, Micah T, Ko, Emily R, Woods, Christopher W, Ginsburg, Geoffrey S, Henao, Ricardo, Tsalik, Ephraim L

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Transcriptional responses define dysregulated immune activation in Hepatitis C (HCV)-naïve recipients of HCV-infected donor kidneys von Steinbrink, Julie M, Miller, Cameron, Myers, Rachel A, Sanoff, Scott, Mazur, Anna, Burke, Thomas W, Byrns, Jennifer, Jackson, Annette M, Luo, Xunrong, McClain, Micah T

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Development of Autoantibodies before the Clinical Onset of Systemic Lupus Erythematosus von Arbuckle, Melissa R, McClain, Micah T, Rubertone, Mark V, Scofield, R. Hal, Dennis, Gregory J, James, Judith A, Harley, John B

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An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility von Wang, Liuyang, Balmat, Thomas J, Antonia, Alejandro L, Constantine, Florica J, Henao, Ricardo, Burke, Thomas W, Ingham, Andy, McClain, Micah T, Tsalik, Ephraim L, Ko, Emily R, Ginsburg, Geoffrey S, DeLong, Mark R, Shen, Xiling, Woods, Christopher W, Hauser, Elizabeth R, Ko, Dennis C

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Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion von Giroux, Nicholas S., Ding, Shengli, McClain, Micah T., Burke, Thomas W., Petzold, Elizabeth, Chung, Hong A., Rivera, Grecia O., Wang, Ergang, Xi, Rui, Bose, Shree, Rotstein, Tomer, Nicholson, Bradly P., Chen, Tianyi, Henao, Ricardo, Sempowski, Gregory D., Denny, Thomas N., De Ussel, Maria Iglesias, Satterwhite, Lisa L., Ko, Emily R., Ginsburg, Geoffrey S., Kraft, Bryan D., Tsalik, Ephraim L., Shen, Xiling, Woods, Christopher W.

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Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance von Ko, Emily R., Reller, Megan E., Tillekeratne, L. Gayani, Bodinayake, Champica K., Miller, Cameron, Burke, Thomas W., Henao, Ricardo, McClain, Micah T., Suchindran, Sunil, Nicholson, Bradly, Blatt, Adam, Petzold, Elizabeth, Tsalik, Ephraim L., Nagahawatte, Ajith, Devasiri, Vasantha, Rubach, Matthew P., Maro, Venance P., Lwezaula, Bingileki F., Kodikara-Arachichi, Wasantha, Kurukulasooriya, Ruvini, De Silva, Aruna D., Clark, Danielle V., Schully, Kevin L., Madut, Deng, Dumler, J. Stephen, Kato, Cecilia, Galloway, Renee, Crump, John A., Ginsburg, Geoffrey S., Minogue, Timothy D., Woods, Christopher W.

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Dynamics of cytokine and antibody responses in community versus hospital SARS-CoV-2 infections von Singh, Tulika, Macintyre, Andrew N, Burke, Thomas W, Anderson, Jack, Petzold, Elizabeth, Stover, Erica L, French, Matthew J, Oguin, 3rd, Thomas H, Demarco, Todd, McClain, Micah T, Ko, Emily R, Park, Lawrence P, Denny, Thomas, Sempowski, Gregory D, Woods, Christopher W

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Early events in lupus humoral autoimmunity suggest initiation through molecular mimicry von James, Judith A, McClain, Micah T, Heinlen, Latisha D, Dennis, Gregory J, Roebuck, Jon, Harley, John B

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Host response to influenza infections in human blood: association of influenza severity with host genetics and transcriptomic response von Schughart, Klaus, Smith, Amber M, Tsalik, Ephraim L, Threlkeld, Stephen C, Sellers, Subhashini, Fischer, 2nd, William A, Schreiber, Jens, Lücke, Eva, Cornberg, Markus, Debarry, Jennifer, Woods, Christopher W, McClain, Micah T, Heise, Mark

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The Host Response to Viral Infections Reveals Common and Virus-Specific Signatures in the Peripheral Blood von Tsalik, Ephraim L, Fiorino, Cassandra, Aqeel, Ammara, Liu, Yiling, Henao, Ricardo, Ko, Emily R, Burke, Thomas W, Reller, Megan E, Bodinayake, Champica K, Nagahawatte, Ajith, Arachchi, Wasantha K, Devasiri, Vasantha, Kurukulasooriya, Ruvini, McClain, Micah T, Woods, Christopher W, Ginsburg, Geoffrey S, Tillekeratne, L Gayani, Schughart, Klaus

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A host gene expression approach for identifying triggers of asthma exacerbations von Lydon, Emily C, Bullard, Charles, Aydin, Mert, Better, Olga M, Mazur, Anna, Nicholson, Bradly P, Ko, Emily R, McClain, Micah T, Ginsburg, Geoffrey S, Woods, Chris W, Burke, Thomas W, Henao, Ricardo, Tsalik, Ephraim L

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Asymptomatic or mild symptomatic SARS-CoV-2 infection elicits durable neutralizing antibody responses in children and adolescents von Garrido, Carolina, Hurst, Jillian H, Lorang, Cynthia G, Aquino, Jhoanna N, Rodriguez, Javier, Pfeiffer, Trevor S, Singh, Tulika, Semmes, Eleanor C, Lugo, Debra J, Rotta, Alexandre T, Turner, Nicholas A, Burke, Thomas W, McClain, Micah T, Petzold, Elizabeth A, Permar, Sallie R, Moody, M Anthony, Woods, Christopher W, Kelly, Matthew S, Fouda, Genevieve G

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Pathogen class-specific transcriptional responses derived from PBMCs accurately discriminate between fungal, bacterial, and viral infections von Steinbrink, Julie M, Liu, Yiling, Henao, Ricardo, Tsalik, Ephraim L, Ginsburg, Geoffrey S, Ramsburg, Elizabeth, Woods, Christopher W, McClain, Micah T

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Author Correction: Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion von Giroux, Nicholas S., Ding, Shengli, McClain, Micah T., Burke, Thomas W., Petzold, Elizabeth, Chung, Hong A., Rivera, Grecia O., Wang, Ergang, Xi, Rui, Bose, Shree, Rotstein, Tomer, Nicholson, Bradly P., Chen, Tianyi, Henao, Ricardo, Sempowski, Gregory D., Denny, Thomas N., De Ussel, Maria Iglesias, Satterwhite, Lisa L., Ko, Emily R., Ginsburg, Geoffrey S., Kraft, Bryan D., Tsalik, Ephraim L., Shen, Xiling, Woods, Christopher W.

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The host transcriptional response to Candidemia is dominated by neutrophil activation and heme biosynthesis and supports novel diagnostic approaches von Steinbrink, Julie M, Myers, Rachel A, Hua, Kaiyuan, Johnson, Melissa D, Seidelman, Jessica L, Tsalik, Ephraim L, Henao, Ricardo, Ginsburg, Geoffrey S, Woods, Christopher W, Alexander, Barbara D, McClain, Micah T

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