Coming of age: ten years of next-generation sequencing technologies von Goodwin, Sara, McPherson, John D., McCombie, W. Richard

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Distinct routes of lineage development reshape the human blood hierarchy across ontogeny von Notta, Faiyaz, Zandi, Sasan, Takayama, Naoya, Dobson, Stephanie, Gan, Olga I., Wilson, Gavin, Kaufmann, Kerstin B., McLeod, Jessica, Laurenti, Elisa, Dunant, Cyrille F., McPherson, John D., Stein, Lincoln D., Dror, Yigal, Dick, John E.

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Robust global microRNA expression profiling using next-generation sequencing technologies von Tam, Shirley, de Borja, Richard, Tsao, Ming-Sound, McPherson, John D

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Spatial genomic heterogeneity within localized, multifocal prostate cancer von Boutros, Paul C, Fraser, Michael, Harding, Nicholas J, de Borja, Richard, Trudel, Dominique, Lalonde, Emilie, Meng, Alice, Hennings-Yeomans, Pablo H, McPherson, Andrew, Sabelnykova, Veronica Y, Zia, Amin, Fox, Natalie S, Livingstone, Julie, Shiah, Yu-Jia, Wang, Jianxin, Beck, Timothy A, Have, Cherry L, Chong, Taryne, Sam, Michelle, Johns, Jeremy, Timms, Lee, Buchner, Nicholas, Wong, Ada, Watson, John D, Simmons, Trent T, P'ng, Christine, Zafarana, Gaetano, Nguyen, Francis, Luo, Xuemei, Chu, Kenneth C, Prokopec, Stephenie D, Sykes, Jenna, Dal Pra, Alan, Berlin, Alejandro, Brown, Andrew, Chan-Seng-Yue, Michelle A, Yousif, Fouad, Denroche, Robert E, Chong, Lauren C, Chen, Gregory M, Jung, Esther, Fung, Clement, Starmans, Maud H W, Chen, Hanbo, Govind, Shaylan K, Hawley, James, D'Costa, Alister, Pintilie, Melania, Waggott, Daryl, Hach, Faraz, Lambin, Philippe, Muthuswamy, Lakshmi B, Cooper, Colin, Eeles, Rosalind, Neal, David, Tetu, Bernard, Sahinalp, Cenk, Stein, Lincoln D, Fleshner, Neil, Shah, Sohrab P, Collins, Colin C, Hudson, Thomas J, McPherson, John D, van der Kwast, Theodorus, Bristow, Robert G

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Diverse EGFR Exon 20 Insertions and Co-Occurring Molecular Alterations Identified by Comprehensive Genomic Profiling of NSCLC von Riess, Jonathan W., Gandara, David R., Frampton, Garrett M., Madison, Russell, Peled, Nir, Bufill, Jose A., Dy, Grace K., Ou, Sai-Hong Ignatius, Stephens, Philip J., McPherson, John D., Lara, Primo N., Burich, Rebekah A., Ross, Jeffrey S., Miller, Vincent A., Ali, Siraj M., Mack, Philip C., Schrock, Alexa B.

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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line von Nattestad, Maria, Goodwin, Sara, Ng, Karen, Baslan, Timour, Sedlazeck, Fritz J, Rescheneder, Philipp, Garvin, Tyler, Fang, Han, Gurtowski, James, Hutton, Elizabeth, Tseng, Elizabeth, Chin, Chen-Shan, Beck, Timothy, Sundaravadanam, Yogi, Kramer, Melissa, Antoniou, Eric, McPherson, John D, Hicks, James, McCombie, W Richard, Schatz, Michael C

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Germline BRCA2 mutations drive prostate cancers with distinct evolutionary trajectories von Taylor, Renea A., Fraser, Michael, Livingstone, Julie, Espiritu, Shadrielle Melijah G., Thorne, Heather, Huang, Vincent, Lo, Winnie, Shiah, Yu-Jia, Yamaguchi, Takafumi N., Sliwinski, Ania, Horsburgh, Sheri, Meng, Alice, Heisler, Lawrence E., Yu, Nancy, Yousif, Fouad, Papargiris, Melissa, Lawrence, Mitchell G., Timms, Lee, Murphy, Declan G., Frydenberg, Mark, Hopkins, Julia F., Bolton, Damien, Clouston, David, McPherson, John D., van der Kwast, Theodorus, Boutros, Paul C., Risbridger, Gail P., Bristow, Robert G.

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Mitochondrial mutations drive prostate cancer aggression von Hopkins, Julia F., Sabelnykova, Veronica Y., Weischenfeldt, Joachim, Simon, Ronald, Aguiar, Jennifer A., Alkallas, Rached, Heisler, Lawrence E., Zhang, Junyan, Watson, John D., Chua, Melvin L. K., Fraser, Michael, Favero, Francesco, Lawerenz, Chris, Plass, Christoph, Sauter, Guido, McPherson, John D., van der Kwast, Theodorus, Korbel, Jan, Schlomm, Thorsten, Bristow, Robert G., Boutros, Paul C.

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High-Plex Spatial RNA Profiling Reveals Cell Type‒Specific Biomarker Expression during Melanoma Development von Kiuru, Maija, Kriner, Michelle A., Wong, Samantha, Zhu, Guannan, Terrell, Jessica R., Li, Qian, Hoang, Margaret, Beechem, Joseph, McPherson, John D.

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Hotspot activating PRKD1 somatic mutations in polymorphous low-grade adenocarcinomas of the salivary glands von Weinreb, Ilan, Piscuoglio, Salvatore, Martelotto, Luciano G, Waggott, Daryl, Ng, Charlotte K Y, Perez-Ordonez, Bayardo, Harding, Nicholas J, Alfaro, Javier, Chu, Kenneth C, Viale, Agnes, Fusco, Nicola, da Cruz Paula, Arnaud, Marchio, Caterina, Sakr, Rita A, Lim, Raymond, Thompson, Lester D R, Chiosea, Simion I, Seethala, Raja R, Skalova, Alena, Stelow, Edward B, Fonseca, Isabel, Assaad, Adel, How, Christine, Wang, Jianxin, de Borja, Richard, Chan-Seng-Yue, Michelle, Howlett, Christopher J, Nichols, Anthony C, Wen, Y Hannah, Katabi, Nora, Buchner, Nicholas, Mullen, Laura, Kislinger, Thomas, Wouters, Bradly G, Liu, Fei-Fei, Norton, Larry, McPherson, John D, Rubin, Brian P, Clarke, Blaise A, Weigelt, Britta, Boutros, Paul C, Reis-Filho, Jorge S

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Next-generation sequencing identifies rare variants associated with Noonan syndrome von Chen, Peng-Chieh, Yin, Jiani, Yu, Hui-Wen, Yuan, Tao, Fernande, Minerva, Yung, Christina K., Trinh, Quang M., Peltekova, Vanya D., Reid, Jeffrey G., Tworog-Dube, Erica, Morgan, Margaret B., Muzny, Donna M., Stein, Lincoln, McPherson, John D., Roberts, Amy E., Gibbs, Richard A., Neel, Benjamin G., Kucherlapati, Raju

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The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes von Angly, Florent E, Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A, Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A, Barott, Katie, Cottrell, Matthew T, Desnues, Christelle, Dinsdale, Elizabeth A, Furlan, Mike, Haynes, Matthew, Henn, Matthew R, Hu, Yongfei, Kirchman, David L, McDole, Tracey, McPherson, John D, Meyer, Folker, Miller, R Michael, Mundt, Egbert, Naviaux, Robert K, Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli, Rohwer, Forest

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Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma von Feigin, Michael E, Garvin, Tyler, Bailey, Peter, Waddell, Nicola, Chang, David K, Kelley, David R, Shuai, Shimin, Gallinger, Steven, McPherson, John D, Grimmond, Sean M, Khurana, Ekta, Stein, Lincoln D, Biankin, Andrew V, Schatz, Michael C, Tuveson, David A

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Cancer Genomics: Technology, Discovery, and Translation von TRAN, Ben, DANCEY, Janet E, HUDSON, Thomas J, NEEL, Benjamin G, SIU, Lillian L, KAMEL-REID, Suzanne, MCPHERSON, John D, BEDARD, Philippe L, BROWN, Andrew M. K, TONG ZHANG, SHAW, Patricia, ONETTO, Nicole, STEIN, Lincoln

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Environmental pesticide exposure and non-Hodgkin lymphoma survival: a population-based study von Poh, Christina, McPherson, John D, Tuscano, Joseph, Li, Qian, Parikh-Patel, Arti, Vogel, Christoph F A, Cockburn, Myles, Keegan, Theresa

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Genomic testing in cancer: Patient knowledge, attitudes, and expectations von Blanchette, Phillip S., Spreafico, Anna, Miller, Fiona A., Chan, Kelvin, Bytautas, Jessica, Kang, Steve, Bedard, Philippe L., Eisen, Andrea, Potanina, Larissa, Holland, Jack, Kamel‐Reid, Suzanne, McPherson, John D., Razak, Albiruni R., Siu, Lillian L.

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ISOWN: accurate somatic mutation identification in the absence of normal tissue controls von Kalatskaya, Irina, Trinh, Quang M, Spears, Melanie, McPherson, John D, Bartlett, John M S, Stein, Lincoln

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ShatterProof: operational detection and quantification of chromothripsis von Govind, Shaylan K, Zia, Amin, Hennings-Yeomans, Pablo H, Watson, John D, Fraser, Michael, Anghel, Catalina, Wyatt, Alexander W, van der Kwast, Theodorus, Collins, Colin C, McPherson, John D, Bristow, Robert G, Boutros, Paul C

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Antioxidant Supplementation Reduces Genomic Aberrations in Human Induced Pluripotent Stem Cells von Ji, Junfeng, Sharma, Vivek, Qi, Suxia, Guarch, Meritxell Espino, Zhao, Ping, Luo, Zhiwei, Fan, Wenxia, Wang, Yu, Mbabaali, Faridah, Neculai, Dante, Esteban, Miguel Angel, McPherson, John D., Batada, Nizar N.

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Next-Generation Sequencing Technologies von McCombie, W Richard, McPherson, John D, Mardis, Elaine R

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