Bayesian history matching of complex infectious disease models using emulation: a tutorial and a case study on HIV in Uganda von Andrianakis, Ioannis, Vernon, Ian R, McCreesh, Nicky, McKinley, Trevelyan J, Oakley, Jeremy E, Nsubuga, Rebecca N, Goldstein, Michael, White, Richard G

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Dirichlet process mixture models to impute missing predictor data in counterfactual prediction models: an application to predict optimal type 2 diabetes therapy von Cardoso, Pedro, Dennis, John M, Bowden, Jack, Shields, Beverley M, McKinley, Trevelyan J

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Body mass index and inflammation in depression and treatment-resistant depression: a Mendelian randomisation study von Karageorgiou, Vasilios, Casanova, Francesco, O’Loughlin, Jessica, Green, Harry, McKinley, Trevelyan J., Bowden, Jack, Tyrrell, Jessica

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Weak and pleiotropy robust sex‐stratified Mendelian randomization in the one sample and two sample settings von Karageorgiou, Vasilios, Tyrrell, Jess, Mckinley, Trevelyan J., Bowden, Jack

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Estimating cetacean population trends from static acoustic monitoring data using Paired Year Ratio Assessment (PYRA) von Grist, Eric P M, McKinley, Trevelyan J, Das, Saptarshi, Tregenza, Tom, Jeffries, Aileen, Tregenza, Nicholas

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Long‐term effects of antibiotic treatments on honeybee colony fitness: A modelling approach von Bulson, Laura, Becher, Matthias A., McKinley, Trevelyan J., Wilfert, Lena, Elderd, Bret

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Risk factors and variations in detection of new bovine tuberculosis breakdowns via slaughterhouse surveillance in Great Britain von McKinley, Trevelyan J, Lipschutz-Powell, Debby, Mitchell, Andrew P, Wood, James L N, Conlan, Andrew J K

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Modelling within-host spatiotemporal dynamics of invasive bacterial disease von Grant, Andrew J, Restif, Olivier, McKinley, Trevelyan J, Sheppard, Mark, Maskell, Duncan J, Mastroeni, Pietro

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Efficient modelling of infectious diseases in wildlife: A case study of bovine tuberculosis in wild badgers von Konzen, Evandro, Delahay, Richard J, Hodgson, Dave J, McDonald, Robbie A, Brooks Pollock, Ellen, Spencer, Simon E F, McKinley, Trevelyan J

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Multi-locus homozygosity promotes actuarial senescence in a wild mammal von Hudson, Dave W, McKinley, Trevelyan J, Benton, Clare H, Delahay, Richard, McDonald, Robbie A, Hodgson, Dave J

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Social interactions of dairy cows and their association with milk yield and somatic cell count von Fielding, Helen R., Silk, Matthew J., McKinley, Trevelyan J., Delahay, Richard J., Wilson-Aggarwal, Jared K., Gauvin, Laetitia, Ozella, Laura, Cattuto, Ciro, McDonald, Robbie A.

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Estimating the hidden burden of bovine tuberculosis in Great Britain von Conlan, Andrew J K, McKinley, Trevelyan J, Karolemeas, Katerina, Pollock, Ellen Brooks, Goodchild, Anthony V, Mitchell, Andrew P, Birch, Colin P D, Clifton-Hadley, Richard S, Wood, James L N

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Approximate Bayesian Computation and Simulation-Based Inference for Complex Stochastic Epidemic Models von McKinley, Trevelyan J., Vernon, Ian, Andrianakis, Ioannis, McCreesh, Nicky, Oakley, Jeremy E., Nsubuga, Rebecca N., Goldstein, Michael, White, Richard G.

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Attenuated Salmonella Typhimurium lacking the pathogenicity island-2 type 3 secretion system grow to high bacterial numbers inside phagocytes in mice von Grant, Andrew J, Morgan, Fiona J E, McKinley, Trevelyan J, Foster, Gemma L, Maskell, Duncan J, Mastroeni, Pietro

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Suppression of Avian Influenza Transmission in Genetically Modified Chickens von Lyall, Jon, Irvine, Richard M, Sherman, Adrian, McKinley, Trevelyan J, Núñez, Alejandro, Purdie, Auriol, Outtrim, Linzy, Brown, Ian H, Rolleston-Smith, Genevieve, Sang, Helen, Tiley, Laurence

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Comparison of Bayesian approaches for developing prediction models in rare disease: application to the identification of patients with Maturity-Onset Diabetes of the Young von Cardoso, Pedro, McDonald, Timothy J, Patel, Kashyap A, Pearson, Ewan R, Hattersley, Andrew T, Shields, Beverley M, McKinley, Trevelyan J

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demography of free‐roaming dog populations and applications to disease and population control von Morters, Michelle K, McKinley, Trevelyan J, Restif, Olivier, Conlan, Andrew J. K, Cleaveland, Sarah, Hampson, Katie, Whay, Helen R, Damriyasa, I. Made, Wood, James L. N, McCallum, Hamish

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Key questions for modelling COVID-19 exit strategies von Thompson, Robin N, Hollingsworth, T Déirdre, Isham, Valerie, Arribas-Bel, Daniel, Ashby, Ben, Britton, Tom, Challenor, Peter, Chappell, Lauren H K, Clapham, Hannah, Cunniffe, Nik J, Dawid, A Philip, Donnelly, Christl A, Eggo, Rosalind M, Funk, Sebastian, Gilbert, Nigel, Glendinning, Paul, Gog, Julia R, Hart, William S, Heesterbeek, Hans, House, Thomas, Keeling, Matt, Kiss, István Z, Kretzschmar, Mirjam E, Lloyd, Alun L, McBryde, Emma S, McCaw, James M, McKinley, Trevelyan J, Miller, Joel C, Morris, Martina, O'Neill, Philip D, Parag, Kris V, Pearson, Carl A B, Pellis, Lorenzo, Pulliam, Juliet R C, Ross, Joshua V, Tomba, Gianpaolo Scalia, Silverman, Bernard W, Struchiner, Claudio J, Tildesley, Michael J, Trapman, Pieter, Webb, Cerian R, Mollison, Denis, Restif, Olivier

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Achieving population-level immunity to rabies in free-roaming dogs in Africa and Asia von Morters, Michelle K, McKinley, Trevelyan J, Horton, Daniel L, Cleaveland, Sarah, Schoeman, Johan P, Restif, Olivier, Whay, Helen R, Goddard, Amelia, Fooks, Anthony R, Damriyasa, I Made, Wood, James L N

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Simulation-based Bayesian inference for epidemic models von McKinley, Trevelyan J., Ross, Joshua V., Deardon, Rob, Cook, Alex R.

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