Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment von McKernan, Kevin J, Spangler, Jessica, Zhang, Lei, Tadigotla, Vasisht, McLaughlin, Stephen, Warner, Jason, Zare, Amir, Boles, Richard G

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Whole methylome analysis by ultra-deep sequencing using two-base encoding von Bormann Chung, Christina A, Boyd, Victoria L, McKernan, Kevin J, Fu, Yutao, Monighetti, Cinna, Peckham, Heather E, Barker, Melissa

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An integrated semiconductor device enabling non-optical genome sequencing von Rothberg, Jonathan M., Hinz, Wolfgang, Rearick, Todd M., Schultz, Jonathan, Mileski, William, Davey, Mel, Leamon, John H., Johnson, Kim, Milgrew, Mark J., Edwards, Matthew, Hoon, Jeremy, Simons, Jan F., Marran, David, Myers, Jason W., Davidson, John F., Branting, Annika, Nobile, John R., Puc, Bernard P., Light, David, Clark, Travis A., Huber, Martin, Branciforte, Jeffrey T., Stoner, Isaac B., Cawley, Simon E., Lyons, Michael, Fu, Yutao, Homer, Nils, Sedova, Marina, Miao, Xin, Reed, Brian, Sabina, Jeffrey, Feierstein, Erika, Schorn, Michelle, Alanjary, Mohammad, Dimalanta, Eileen, Dressman, Devin, Kasinskas, Rachel, Sokolsky, Tanya, Fidanza, Jacqueline A., Namsaraev, Eugeni, McKernan, Kevin J., Williams, Alan, Roth, G. Thomas, Bustillo, James

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Stem cell transcriptome profiling via massive-scale mRNA sequencing von Perkins, Andrew C, Taylor, Darrin F, Manning, Jonathan M, Lee, Clarence C, Wani, Shivangi, McKernan, Kevin J, Bethel, Graeme, Gardiner, Brooke B A, Peckham, Heather E, Robertson, Alan J, Bruce, Stephen J, Ranade, Swati S, Faulkner, Geoffrey J, Brown, Mellissa K, Forrest, Alistair R R, Grimmond, Sean M, Cloonan, Nicole, Steptoe, Anita L, Kolle, Gabriel

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A small-cell lung cancer genome with complex signatures of tobacco exposure von Campbell, Peter J, Pleasance, Erin D, Stephens, Philip J, O'Meara, Sarah, McBride, David J, Meynert, Alison, Jones, David, Lin, Meng-Lay, Beare, David, Lau, King Wai, Greenman, Chris, Varela, Ignacio, Nik-Zainal, Serena, Davies, Helen R, Ordoñez, Gonzalo R, Mudie, Laura J, Latimer, Calli, Edkins, Sarah, Stebbings, Lucy, Chen, Lina, Jia, Mingming, Leroy, Catherine, Marshall, John, Menzies, Andrew, Butler, Adam, Teague, Jon W, Mangion, Jonathon, Sun, Yongming A, McLaughlin, Stephen F, Peckham, Heather E, Tsung, Eric F, Costa, Gina L, Lee, Clarence C, Minna, John D, Gazdar, Adi, Birney, Ewan, Rhodes, Michael D, McKernan, Kevin J, Stratton, Michael R, Futreal, P. Andrew

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype von Weissenbach, Jean, Jaillon, Olivier, Aury, Jean-Marc, Brunet, Frédéric, Petit, Jean-Louis, Stange-Thomann, Nicole, Mauceli, Evan, Bouneau, Laurence, Fischer, Cécile, Ozouf-Costaz, Catherine, Bernot, Alain, Nicaud, Sophie, Jaffe, David, Fisher, Sheila, Lutfalla, Georges, Dossat, Carole, Segurens, Béatrice, Dasilva, Corinne, Salanoubat, Marcel, Levy, Michael, Boudet, Nathalie, Castellano, Sergi, Anthouard, Véronique, Jubin, Claire, Castelli, Vanina, Katinka, Michael, Vacherie, Benoît, Biémont, Christian, Skalli, Zineb, Cattolico, Laurence, Poulain, Julie, de Berardinis, Véronique, Cruaud, Corinne, Duprat, Simone, Brottier, Philippe, Coutanceau, Jean-Pierre, Gouzy, Jérôme, Parra, Genis, Lardier, Guillaume, Chapple, Charles, McKernan, Kevin J, McEwan, Paul, Bosak, Stephanie, Kellis, Manolis, Volff, Jean-Nicolas, Guigó, Roderic, Zody, Michael C, Mesirov, Jill, Lindblad-Toh, Kerstin, Birren, Bruce, Nusbaum, Chad, Kahn, Daniel, Robinson-Rechavi, Marc, Laudet, Vincent, Schachter, Vincent, Quétier, Francis, Saurin, William, Scarpelli, Claude, Wincker, Patrick, Lander, Eric S, Roest Crollius, Hugues

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Rapid whole-genome mutational profiling using next-generation sequencing technologies von Smith, Douglas R, Quinlan, Aaron R, Peckham, Heather E, Makowsky, Kathryn, Tao, Wei, Woolf, Betty, Shen, Lei, Donahue, William F, Tusneem, Nadeem, Stromberg, Michael P, Stewart, Donald A, Zhang, Lu, Ranade, Swati S, Warner, Jason B, Lee, Clarence C, Coleman, Brittney E, Zhang, Zheng, McLaughlin, Stephen F, Malek, Joel A, Sorenson, Jon M, Blanchard, Alan P, Chapman, Jarrod, Hillman, David, Chen, Feng, Rokhsar, Daniel S, McKernan, Kevin J, Jeffries, Thomas W, Marth, Gabor T, Richardson, Paul M

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Mutation in The Nuclear-Encoded Mitochondrial Isoleucyl-tRNA Synthetase IARS2 in Patients with Cataracts, Growth Hormone Deficiency with Short Stature, Partial Sensorineural Deafne... von Schwartzentruber, Jeremy, Buhas, Daniela, Majewski, Jacek, Sasarman, Florin, Papillon-Cavanagh, Simon, Thiffaut, Isabelle, Sheldon, Katherine M., Massicotte, Christine, Patry, Lysanne, Simon, Mariella, Zare, Amir S., McKernan, Kevin J., Michaud, Jacques, Boles, Richard G., Deal, Cheri L., Desilets, Valerie, Shoubridge, Eric A., Samuels, Mark E.

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Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq von Motallebipour, Mehdi, Ameur, Adam, Reddy Bysani, Madhu Sudhan, Patra, Kalicharan, Wallerman, Ola, Mangion, Jonathan, Barker, Melissa A, McKernan, Kevin J, Komorowski, Jan, Wadelius, Claes

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DREAMing of a patent-free human genome for clinical sequencing von McKernan, Kevin J, Spangler, Jessica, Helbert, Yvonne, Zhang, Lei, Tadigotla, Vasisht

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Hurt, tired and queasy: Specific variants in the ATPase domain of the TRAP1 mitochondrial chaperone are associated with common, chronic "functional" symptomatology including pain,... von Boles, Richard G, Hornung, Holly A, Moody, Alastair E, Ortiz, Thomas B, Wong, Stacey A, Eggington, Julie M, Stanley, Christine M, Gao, Mu, Zhou, Hongyi, McLaughlin, Stephen, Zare, Amir S, Sheldon, Katherine M, Skolnick, Jeffrey, McKernan, Kevin J

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Mutation in The Nuclear-Encoded Mitochondrial Isoleucyl-tRNA Synthetase IARS2 in Patients with Cataracts, Growth Hormone Deficiency with Short Stature, Partial Sensorineural Deafne... von Schwartzentruber, Jeremy, Buhas, Daniela, Majewski, Jacek, Sasarman, Florin, Papillon-Cavanagh, Simon, Thiffault, Isabelle, Sheldon, Katherine M., Massicotte, Christine, Patry, Lysanne, Simon, Mariella, Zare, Amir S., McKernan, Kevin J., Consortium, FORGE Canada, Michaud, Jacques, Boles, Richard G., Deal, Cheri L., Desilets, Valerie, Shoubridge, Eric A., Samuels, Mark E.

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A Magnetic Attraction to High-Throughput Genomics von Hawkins, Trevor L., McKernan, Kevin J., Jacotot, Laurent B., MacKenzie, Jason B., Richardson, Paul M., Lander, Eric S.

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A map of human genome variation from population-scale sequencing von Abecasis, Gonçalo R, Altshuler, David, Auton, Adam, Brooks, Lisa D, Durbin, Richard M, Gibbs, Richard A, Hurles, Matt E, McVean, Gil A

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Mapping copy number variation by population-scale genome sequencing von Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kural, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gabor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.

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Diversity of Human Copy Number Variation and Multicopy Genes von Sudmant, Peter H., Kitzman, Jacob O., Antonacci, Francesca, Alkan, Can, Malig, Maika, Tsalenko, Anya, Sampas, Nick, Bruhn, Laurakay, Shendure, Jay, Eichler, Evan E.

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Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica von Malek, Joel A., Wierzbowski, Jamey M., Tao, Wei, Bosak, Stephanie A., Saranga, David J., Doucette‐Stamm, Lynn, Smith, Douglas R., McEwan, Paul J., McKernan, Kevin J.

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Demographic history and rare allele sharing among human populations von Gravel, Simon, Henn, Brenna M, Gutenkunst, Ryan N, Indap, Amit R, Marth, Gabor T, Clark, Andrew G, Yu, Fuli, Gibbs, Richard A, Bustamante, Carlos D

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Variation in genome-wide mutation rates within and between human families von CONRAD, Donald F, KEEBLER, Jonathan E. M, ZILVERSMIT, Martine, CARTWRIGHT, Reed, ROULEAU, Guy A, DALY, Mark, STONE, Eric A, HURLES, Matthew E, AWADALLA, Philip, DEPRISTO, Mark A, LINDSAY, Sarah J, YUJUN ZHANG, CASALS, Ferran, IDAGHDOUR, Youssef, HARTL, Chris L, TORROJA, Carlos, GARIMELLA, Kiran V

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The 1000 Genomes Project: data management and community access von Clarke, Laura, Zheng-Bradley, Xiangqun, Smith, Richard, Kulesha, Eugene, Xiao, Chunlin, Toneva, Iliana, Vaughan, Brendan, Preuss, Don, Leinonen, Rasko, Shumway, Martin, Sherry, Stephen, Flicek, Paul

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