Multivariable association discovery in population-scale meta-omics studies von Mallick, Himel, Rahnavard, Ali, McIver, Lauren J., Ma, Siyuan, Zhang, Yancong, Nguyen, Long H., Tickle, Timothy L., Weingart, George, Ren, Boyu, Schwager, Emma H., Chatterjee, Suvo, Thompson, Kelsey N., Wilkinson, Jeremy E., Subramanian, Ayshwarya, Lu, Yiren, Waldron, Levi, Paulson, Joseph N., Franzosa, Eric A., Bravo, Hector Corrada, Huttenhower, Curtis

Volltext

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 von Beghini, Francesco, McIver, Lauren J., Blanco-Miguez, Aitor, Dubois, Leonard, Asnicar, Francesco, Maharjan, Sagun, Mailyan, Ana, Manghi, Paolo, Scholz, Matthias, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Weingart, George, Zhang, Yancong, Zolfo, Moreno, Huttenhower, Curtis, Franzosa, Eric A., Segata, Nicola

Volltext

Gut microbiome structure and metabolic activity in inflammatory bowel disease von Franzosa, Eric A., Sirota-Madi, Alexandra, Avila-Pacheco, Julian, Fornelos, Nadine, Haiser, Henry J., Reinker, Stefan, Vatanen, Tommi, Hall, A. Brantley, Mallick, Himel, McIver, Lauren J., Sauk, Jenny S., Wilson, Robin G., Stevens, Betsy W., Scott, Justin M., Pierce, Kerry, Deik, Amy A., Bullock, Kevin, Imhann, Floris, Porter, Jeffrey A., Zhernakova, Alexandra, Fu, Jingyuan, Weersma, Rinse K., Wijmenga, Cisca, Clish, Clary B., Vlamakis, Hera, Huttenhower, Curtis, Xavier, Ramnik J.

Volltext

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome von Schirmer, Melanie, Franzosa, Eric A., Lloyd-Price, Jason, McIver, Lauren J., Schwager, Randall, Poon, Tiffany W., Ananthakrishnan, Ashwin N., Andrews, Elizabeth, Barron, Gildardo, Lake, Kathleen, Prasad, Mahadev, Sauk, Jenny, Stevens, Betsy, Wilson, Robin G., Braun, Jonathan, Denson, Lee A., Kugathasan, Subra, McGovern, Dermot P. B., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis

Volltext

Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel von Kim, Young Bun, Oh, Jung Hun, McIver, Lauren J., Rashkovetsky, Eugenia, Michalak, Katarzyna, Garner, Harold R., Kang, Lin, Nevo, Eviatar, Korol, Abraham B., Michalak, Pawel

Volltext

Species-level functional profiling of metagenomes and metatranscriptomes von Franzosa, Eric A., McIver, Lauren J., Rahnavard, Gholamali, Thompson, Luke R., Schirmer, Melanie, Weingart, George, Lipson, Karen Schwarzberg, Knight, Rob, Caporaso, J. Gregory, Segata, Nicola, Huttenhower, Curtis

Volltext

A two-cohort study on the association between the gut microbiota and bone density, microarchitecture, and strength von Okoro, Paul C, Orwoll, Eric S, Huttenhower, Curtis, Morgan, Xochitl, Kuntz, Thomas M, McIver, Lauren J, Dufour, Alyssa B, Bouxsein, Mary L, Langsetmo, Lisa, Farsijani, Samaneh, Kado, Deborah M, Pacifici, Roberto, Sahni, Shivani, Kiel, Douglas P

Volltext

bioBakery: a meta'omic analysis environment von McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis

Volltext

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 von Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J., Thompson, Kelsey N., Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D., Thomas, Andrew Maltez, Nickols, William A., Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E., Spector, Tim D., Franzosa, Eric A., Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola

Volltext

Discovery of bioactive microbial gene products in inflammatory bowel disease von Zhang, Yancong, Bhosle, Amrisha, Bae, Sena, McIver, Lauren J., Pishchany, Gleb, Accorsi, Emma K., Thompson, Kelsey N., Arze, Cesar, Wang, Ya, Subramanian, Ayshwarya, Kearney, Sean M., Pawluk, April, Plichta, Damian R., Rahnavard, Ali, Shafquat, Afrah, Xavier, Ramnik J., Vlamakis, Hera, Garrett, Wendy S., Krueger, Andy, Huttenhower, Curtis, Franzosa, Eric A.

Volltext

Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure von Galindo, Cristi L, Skinner, Michael A, Errami, Mounir, Olson, L Danielle, Watson, David A, Li, Jing, McCormick, John F, McIver, Lauren J, Kumar, Neil M, Pham, Thinh Q, Garner, Harold R

Volltext

High-sensitivity pattern discovery in large, paired multiomic datasets von Ghazi, Andrew R, Sucipto, Kathleen, Rahnavard, Ali, Franzosa, Eric A, McIver, Lauren J, Lloyd-Price, Jason, Schwager, Emma, Weingart, George, Moon, Yo Sup, Morgan, Xochitl C, Waldron, Levi, Huttenhower, Curtis

Volltext

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries von Piperni, Elisa, Nguyen, Long H., Manghi, Paolo, Kim, Hanseul, Pasolli, Edoardo, Andreu-Sánchez, Sergio, Arrè, Alberto, Bermingham, Kate M., Blanco-Míguez, Aitor, Manara, Serena, Valles-Colomer, Mireia, Bakker, Elco, Busonero, Fabio, Davies, Richard, Fiorillo, Edoardo, Giordano, Francesca, Hadjigeorgiou, George, Leeming, Emily R., Lobina, Monia, Masala, Marco, Maschio, Andrea, McIver, Lauren J., Pala, Mauro, Pitzalis, Maristella, Wolf, Jonathan, Fu, Jingyuan, Zhernakova, Alexandra, Cacciò, Simone M., Cucca, Francesco, Berry, Sarah E., Ercolini, Danilo, Chan, Andrew T., Huttenhower, Curtis, Spector, Tim D., Segata, Nicola, Asnicar, Francesco

Volltext

Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods von Branck, Tobyn, Hu, Zhiji, Nickols, William A, Walsh, Aaron M, Bhosle, Amrisha, Short, Meghan I, Nearing, Jacob T, Asnicar, Francesco, McIver, Lauren J, Maharjan, Sagun, Rahnavard, Ali, Louyakis, Artemis S, Badri, Dayakar V, Brockel, Christoph, Thompson, Kelsey N, Huttenhower, Curtis

Volltext

Overview of the Microbiome Among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies von Everett, Christine, Li, Chengchen, Wilkinson, Jeremy E., Nguyen, Long H., McIver, Lauren J., Ivey, Kerry, Izard, Jacques, Palacios, Natalia, Eliassen, A. Heather, Willett, Walter C., Ascherio, Alberto, Sun, Qi, Tworoger, Shelley S., Chan, Andrew T., Garrett, Wendy S., Huttenhower, Curtis, Rimm, Eric B., Song, Mingyang

Volltext

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 von Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Kosciolek, Tomasz, Kreps, Jorden, Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Peoples, Samuel L., Petras, Daniel, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, van der Hooft, Justin J. J., Vargas, Fernando, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory

Volltext

Publisher Correction: Overview of the Microbiome Among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies von Everett, Christine, Li, Chengchen, Wilkinson, Jeremy E., Nguyen, Long H., McIver, Lauren J., Ivey, Kerry, Izard, Jacques, Palacios, Natalia, Eliassen, A. Heather, Willett, Walter C., Ascherio, Alberto, Sun, Qi, Tworoger, Shelley S., Chan, Andrew T., Garrett, Wendy S., Huttenhower, Curtis, Rimm, Eric B., Song, Mingyang

Volltext

Large scale comparison of non-human sequences in human sequencing data von Tae, Hongseok, Karunasena, Enusha, Bavarva, Jasmin H., McIver, Lauren J., Garner, Harold R.

Volltext

Research funding: Same work, twice the money? von Garner, Harold R, McIver, Lauren J, Waitzkin, Michael B

Volltext

Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome von Fonville, Natalie C., Velmurugan, Karthik Raja, Tae, Hongseok, Vaksman, Zalman, McIver, Lauren J., Garner, Harold R.

Volltext