Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics von McHugo, Gillian P, Dover, Michael J, MacHugh, David E

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Preferential differential gene expression within the WC1.1+ γδ T cell compartment in cattle naturally infected with Mycobacterium bovis von Bhat, Sajad A., Elnaggar, Mahmoud, Hall, Thomas J., McHugo, Gillian P., Reid, Cian, MacHugh, David E., Meade, Kieran G.

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Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria von Hall, Thomas J, Mullen, Michael P, McHugo, Gillian P, Killick, Kate E, Ring, Siobhán C, Berry, Donagh P, Correia, Carolina N, Browne, John A, Gordon, Stephen V, MacHugh, David E

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Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations von McHugo, Gillian P, Ward, James A, Ng'ang'a, Said Ismael, Frantz, Laurent A F, Salter-Townshend, Michael, Hill, Emmeline W, O'Gorman, Grace M, Meade, Kieran G, Hall, Thomas J, MacHugh, David E

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Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens von Hall, Thomas J., McHugo, Gillian P., Mullen, Michael P., Ward, James A., Killick, Kate E., Browne, John A., Gordon, Stephen V., MacHugh, David E.

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Unveiling the Role of Endoplasmic Reticulum Stress Pathways in Canine Demodicosis von Kelly, Pamela A., McHugo, Gillian P., Scaife, Caitriona, Peters, Susan, Stevenson, M. Lynn, McKay, Jennifer S., MacHugh, David E., Saez, Irene Lara, Breathnach, Rory

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Genomic insights into the population history and adaptive traits of Latin American Criollo cattle von Ward, James A, Ng'ang'a, Said I, Randhawa, Imtiaz A S, McHugo, Gillian P, O'Grady, John F, Flórez, Julio M, Browne, John A, Pérez O'Brien, Ana M, Landaeta-Hernández, Antonio J, Garcia, Jóse F, Sonstegard, Tad S, Frantz, Laurent A F, Salter-Townshend, Michael, MacHugh, David E

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High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with Mycobacterium bovis across an experimental time course von Correia, Carolina N., McHugo, Gillian P., Browne, John A., McLoughlin, Kirsten E., Nalpas, Nicolas C., Magee, David A., Whelan, Adam O., Villarreal-Ramos, Bernardo, Vordermeier, H. Martin, Gormley, Eamonn, Gordon, Stephen V., MacHugh, David E.

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Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations von Ward, James A., McHugo, Gillian P., Dover, Michael J., Hall, Thomas J., Ng'ang'a, Said Ismael, Sonstegard, Tad S., Bradley, Daniel G., Frantz, Laurent A.F., Salter-Townshend, Michael, MacHugh, David E.

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A Population Genomics Analysis of the Native Irish Galway Sheep Breed von McHugo, Gillian P., Browett, Sam, Randhawa, Imtiaz A. S., Howard, Dawn J., Mullen, Michael P., Richardson, Ian W., Park, Stephen D. E., Magee, David A., Scraggs, Erik, Dover, Michael J., Correia, Carolina N., Hanrahan, James P., MacHugh, David E.

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Genomic Characterisation of the Indigenous Irish Kerry Cattle Breed von Browett, Sam, McHugo, Gillian, Richardson, Ian W, Magee, David A, Park, Stephen D E, Fahey, Alan G, Kearney, John F, Correia, Carolina N, Randhawa, Imtiaz A S, MacHugh, David E

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Data from: Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations von McHugo, Gillian, Ward, James, Ng’ang’a, Said Ismael, Frantz, Laurent, Bradley, Daniel, Salter-Townshend, Michael, Hill, Emmeline, O'Gorman, Grace, Meade, Kieran, Hall, Thomas, MacHugh, David E.

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Ward_et_al.(2023)_Table_S3 from Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle von Ward, James A., Ng'ang'a, Said I., Randhawa, Imtiaz A.S., McHugo, Gillian P., O'Grady, John F., Flórez, Julio M., Browne, John A., Pérez O’Brien, Ana M., Landaeta-Hernández, Antonio J., Garcia, Jóse F., Sonstegard, Tad S., Frantz, Laurent A.F., Salter-Townshend, Michael, MacHugh, David

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Ward_et_al.(2023)_Table_S8 from Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle von Ward, James A., Ng'ang'a, Said I., Randhawa, Imtiaz A.S., McHugo, Gillian P., O'Grady, John F., Flórez, Julio M., Browne, John A., Pérez O’Brien, Ana M., Landaeta-Hernández, Antonio J., Garcia, Jóse F., Sonstegard, Tad S., Frantz, Laurent A.F., Salter-Townshend, Michael, MacHugh, David

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Ward_et_al.(2023)_Table_S2 from Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle von Ward, James A., Ng'ang'a, Said I., Randhawa, Imtiaz A.S., McHugo, Gillian P., O'Grady, John F., Flórez, Julio M., Browne, John A., Pérez O’Brien, Ana M., Landaeta-Hernández, Antonio J., Garcia, Jóse F., Sonstegard, Tad S., Frantz, Laurent A.F., Salter-Townshend, Michael, MacHugh, David

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Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria: RNA-seq statistics and results von MacHugh, David, Hall, Thomas, Mullen, Michael, McHugo, Gillian, Killick, Kate, Berry, Donagh, Ring, Siobhán, Correia, Carolina, Browne, John, Gordon, Stephen

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Additional file 1 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria von Hall, Thomas J., Mullen, Michael P., McHugo, Gillian P., Killick, Kate E., Siobhán C. Ring, Berry, Donagh P., Correia, Carolina N., Browne, John A., Gordon, Stephen V., MacHugh, David E.

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Additional file 5 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria von Hall, Thomas J., Mullen, Michael P., McHugo, Gillian P., Killick, Kate E., Siobhán C. Ring, Berry, Donagh P., Correia, Carolina N., Browne, John A., Gordon, Stephen V., MacHugh, David E.

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Additional file 2 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria von Hall, Thomas J., Mullen, Michael P., McHugo, Gillian P., Killick, Kate E., Siobhán C. Ring, Berry, Donagh P., Correia, Carolina N., Browne, John A., Gordon, Stephen V., MacHugh, David E.

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Additional file 3 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria von Hall, Thomas J., Mullen, Michael P., McHugo, Gillian P., Killick, Kate E., Siobhán C. Ring, Berry, Donagh P., Correia, Carolina N., Browne, John A., Gordon, Stephen V., MacHugh, David E.

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