Gut microbes define liver cancer risk in mice exposed to chemical and viral transgenic hepatocarcinogens von Fox, J G, Feng, Y, Theve, E J, Raczynski, A R, Fiala, J L A, Doernte, A L, Williams, M, McFaline, J L, Essigmann, J M, Schauer, D B, Tannenbaum, S R, Dedon, P C, Weinman, S A, Lemon, S M, Fry, R C, Rogers, A B

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Surveying the damage: the challenges of developing nucleic acid biomarkers of inflammation von Son, Junghyun, Pang, Bo, McFaline, Jose L, Taghizadeh, Koli, Dedon, Peter C

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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data von Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole

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A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition von McFaline-Figueroa, José L., Hill, Andrew J., Qiu, Xiaojie, Jackson, Dana, Shendure, Jay, Trapnell, Cole

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On the design of CRISPR-based single-cell molecular screens von Hill, Andrew J, McFaline-Figueroa, José L, Starita, Lea M, Gasperini, Molly J, Matreyek, Kenneth A, Packer, Jonathan, Jackson, Dana, Shendure, Jay, Trapnell, Cole

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Predicting cellular responses to complex perturbations in high‐throughput screens von Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J

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A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens von Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S., Trapnell, Cole, Ahituv, Nadav, Shendure, Jay

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Joint profiling of chromatin accessibility and gene expression in thousands of single cells von Cao, Junyue, Cusanovich, Darren A, Ramani, Vijay, Aghamirzaie, Delasa, Pliner, Hannah A, Hill, Andrew J, Daza, Riza M, McFaline-Figueroa, Jose L, Packer, Jonathan S, Christiansen, Lena, Steemers, Frank J, Adey, Andrew C, Trapnell, Cole, Shendure, Jay

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Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma von O’Connor, Samantha A, Feldman, Heather M, Arora, Sonali, Hoellerbauer, Pia, Toledo, Chad M, Corrin, Philip, Carter, Lucas, Kufeld, Megan, Bolouri, Hamid, Basom, Ryan, Delrow, Jeffrey, McFaline‐Figueroa, José L, Trapnell, Cole, Pollard, Steven M, Patel, Anoop, Paddison, Patrick J, Plaisier, Christopher L

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Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide von McFaline-Figueroa, José L, Braun, Christian J, Stanciu, Monica, Nagel, Zachary D, Mazzucato, Patrizia, Sangaraju, Dewakar, Cerniauskas, Edvinas, Barford, Kelly, Vargas, Amanda, Chen, Yimin, Tretyakova, Natalia, Lees, Jacqueline A, Hemann, Michael T, White, Forest M, Samson, Leona D

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Thyroid hormone regulates distinct paths to maturation in pigment cell lineages von Saunders, Lauren M, Mishra, Abhishek K, Aman, Andrew J, Lewis, Victor M, Toomey, Matthew B, Packer, Jonathan S, Qiu, Xiaojie, McFaline-Figueroa, Jose L, Corbo, Joseph C, Trapnell, Cole, Parichy, David M

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Targeting TWIST1 through loss of function inhibits tumorigenicity of human glioblastoma von Mikheev, Andrei M., Mikheeva, Svetlana A., Severs, Liza J., Funk, Cory C., Huang, Lei, McFaline‐Figueroa, José L., Schwensen, Jeanette, Trapnell, Cole, Price, Nathan D., Wong, Stephen, Rostomily, Robert C.

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A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens von Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S., Trapnell, Cole, Ahituv, Nadav, Shendure, Jay

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Neoadjuvant anti-PD1 immunotherapy for surgically accessible recurrent glioblastoma: clinical and molecular outcomes of a stage 2 single-arm expansion cohort von McFaline-Figueroa, J. Ricardo, Sun, Lu, Youssef, Gilbert C., Huang, Raymond, Li, Gang, Kim, Jiyoon, Lee, Eudocia Q., Nayak, Lakshmi, Chukwueke, Ugonma, Beroukhim, Rameen, Batchelor, Tracy T., Chiocca, E. Antonio, Everson, Richard G., Doherty, Lisa, Stefanik, Jennifer, Partridge, Kathryn, Spearman, Amanda, Myers, Alexa, Westergaard, Catharina, Russ, Alyssa, Lavallee, Maria, Smokovich, Anna, LaForest-Roys, Corey, Garcia Fox, Rachel, McCluskey, Christine, Bi, Wenya Linda, Arnaout, Omar, Peruzzi, PierPaolo, Cosgrove, G. Rees, Ligon, Keith L., Arrillaga-Romany, Isabel, Clarke, Jennifer L., Reardon, David A., Cloughesy, Timothy F., Prins, Robert M., Wen, Patrick Y.

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Continuous Elimination of Oxidized Nucleotides Is Necessary to Prevent Rapid Onset of Cellular Senescence von Rai, Priyamvada, Onder, Tamer T., Young, Jennifer J., McFaline, Jose L., Pang, Bo, Dedon, Peter C., Weinberg, Robert A.

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Inaugural Results of the Individualized Screening Trial of Innovative Glioblastoma Therapy: A Phase II Platform Trial for Newly Diagnosed Glioblastoma Using Bayesian Adaptive Rando... von Rahman, Rifaquat, Trippa, Lorenzo, Lee, Eudocia Q, Arrillaga-Romany, Isabel, Fell, Geoffrey, Touat, Mehdi, McCluskey, Christine, Wiley, Jennifer, Gaffey, Sarah, Drappatz, Jan, Welch, Mary R, Galanis, Evanthia, Ahluwalia, Manmeet S, Colman, Howard, Nabors, L Burt, Hepel, Jaroslaw, Elinzano, Heinrich, Schiff, David, Chukwueke, Ugonma N, Beroukhim, Rameen, Nayak, Lakshmi, McFaline-Figueroa, J Ricardo, Batchelor, Tracy T, Rinne, Mikael L, Kaley, Thomas J, Lu-Emerson, Christine, Mellinghoff, Ingo K, Bi, Wenya Linda, Arnaout, Omar, Peruzzi, Pier Paolo, Haas-Kogan, Daphne, Tanguturi, Shyam, Cagney, Daniel, Aizer, Ayal, Doherty, Lisa, Lavallee, Maria, Fisher-Longden, Brittany, Dowling, Shanna, Geduldig, Jack, Watkinson, Fiona, Pisano, William, Malinowski, Seth, Ramkissoon, Shakti, Santagata, Sandro, Meredith, David M, Chiocca, E Antonio, Reardon, David A, Alexander, Brian M, Ligon, Keith L, Wen, Patrick Y

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Defining interventions and metrics to improve diversity in CNS clinical trial participation: A SNO and RANO effort von Budhu, Joshua A, Chukwueke, Ugonma N, Jackson, Sadhana, Lee, Eudocia Q, McFaline-Figueroa, J Ricardo, Willmarth, Nicole, Dalmage, Mahalia, Kawachi, Ichiro, Arons, David, Chang, Susan M, Galanis, Evanthia, Hervey-Jumper, Shawn L, Wen, Patrick Y, Porter, Alyx B

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Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy von McFaline-Figueroa, José L., Srivatsan, Sanjay, Hill, Andrew J., Gasperini, Molly, Jackson, Dana L., Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G., Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J., Shendure, Jay, Trapnell, Cole

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Enhancing neuro-oncology care through equity-driven applications of artificial intelligence von Mehari, Mulki, Sibih, Youssef, Dada, Abraham, Chang, Susan M, Wen, Patrick Y, Molinaro, Annette M, Chukwueke, Ugonma N, Budhu, Joshua A, Jackson, Sadhana, McFaline-Figueroa, J Ricardo, Porter, Alyx, Hervey-Jumper, Shawn L

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Synthetic CRISPR/Cas9 reagents facilitate genome editing and homology directed repair von DiNapoli, Sara E, Martinez-McFaline, Raul, Gribbin, Caitlin K, Wrighton, Paul J, Balgobin, Courtney A, Nelson, Isabel, Leonard, Abigail, Maskin, Carolyn R, Shwartz, Arkadi, Quenzer, Eleanor D, Mailhiot, Darya, Kao, Clara, McConnell, Sean C, de Jong, Jill L O, Goessling, Wolfram, Houvras, Yariv

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