GemSIM: general, error-model based simulator of next-generation sequencing data von McElroy, Kerensa E, Luciani, Fabio, Thomas, Torsten

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Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community von Gómez, Pedro, Paterson, Steve, De Meester, Luc, Liu, Xuan, Lenzi, Luca, Sharma, M. D., McElroy, Kerensa, Buckling, Angus

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Strain-specific parallel evolution drives short-term diversification during Pseudomonas aeruginosa biofilm formation von McElroy, Kerensa E, Hui, Janice G K, Woo, Jerry K K, Luk, Alison W S, Webb, Jeremy S, Kjelleberg, Staffan, Rice, Scott A, Thomas, Torsten

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Reconstruction of ribosomal RNA genes from metagenomic data von Fan, Lu, McElroy, Kerensa, Thomas, Torsten

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Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection von Bull, Rowena A, Luciani, Fabio, McElroy, Kerensa, Gaudieri, Silvana, Pham, Son T, Chopra, Abha, Cameron, Barbara, Maher, Lisa, Dore, Gregory J, White, Peter A, Lloyd, Andrew R

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Contribution of Intra- and Interhost Dynamics to Norovirus Evolution von BULL, Rowena A, EDEN, John-Sebastian, LUCIANI, Fabio, MCELROY, Kerensa, RAWLINSON, William D, WHITE, Peter A

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Genome-Enabled Analysis of Population Dynamics and Virulence-Associated Loci in the Oat Crown Rust Fungus Puccinia coronata f. sp. avenae von Hewitt, Tim C, Henningsen, Eva C, Pereira, Danilo, McElroy, Kerensa, Nazareno, Eric S, Dugyala, Sheshanka, Nguyen-Phuc, Hoa, Li, Feng, Miller, Marisa E, Visser, Botma, Pretorius, Zacharias A, Boshoff, Willem H P, Sperschneider, Jana, Stukenbrock, Eva H, Kianian, Shahryar F, Dodds, Peter N, Figueroa, Melania

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Causes and Consequences of a Variant Strain of Phaeobacter inhibens With Reduced Competition von Majzoub, Marwan E, McElroy, Kerensa, Maczka, Michael, Thomas, Torsten, Egan, Suhelen

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Robbery in progress: Historical museum collections bring to light a mitochondrial capture within a bird species widespread across southern Australia, the Copperback Quail‐thrush Ci... von McElroy, Kerensa, Black, Andrew, Dolman, Gaynor, Horton, Philippa, Pedler, Lynn, Campbell, Catriona D., Drew, Alex, Joseph, Leo

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Genomic Evolution of the Marine Bacterium Phaeobacter inhibens during Biofilm Growth von Majzoub, Marwan E, McElroy, Kerensa, Maczka, Michael, Schulz, Stefan, Thomas, Torsten, Egan, Suhelen

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Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias von McElroy, Kerensa, Zagordi, Osvaldo, Bull, Rowena, Luciani, Fabio, Beerenwinkel, Niko

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Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation von Li, Fang, Rane, Rahul V., Luria, Victor, Xiong, Zijun, Chen, Jiawei, Li, Zimai, Catullo, Renee A., Griffin, Philippa C., Schiffer, Michele, Pearce, Stephen, Lee, Siu Fai, McElroy, Kerensa, Stocker, Ann, Shirriffs, Jennifer, Cockerell, Fiona, Coppin, Chris, Sgrò, Carla M., Karger, Amir, Cain, John W., Weber, Jessica A., Santpere, Gabriel, Kirschner, Marc W., Hoffmann, Ary A., Oakeshott, John G., Zhang, Guojie

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Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions von McElroy, Kerensa, Thomas, Torsten, Luciani, Fabio

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Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community von Gomez, Pedro, Paterson, Steve, De Meester, Luc, Liu, Xuan, Lenzi, Luca, Sharma, M.D, McElroy, Kerensa, Buckling, Angus

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Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification von McElroy, Kerensa, Luciani, Fabio, Hui, Janice, Rice, Scott, Thomas, Torsten

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Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa von McElroy, Kerensa, Mouton, Laurence, Du Pasquier, Louis, Qi, Weihong, Ebert, Dieter

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Strain-specific parallel evolution drives short-term diversification during Pseudomonas aeruginosa biofilm formation von McElroy, Kerensa E., Hui, Janice G. K., Woo, Jerry K. K., Luk, Alison W. S., Webb, Jeremy S., Kjelleberg, Staffan, Rice, Scott A., Thomas, Torsten

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Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions von McElroy, Kerensa, Thomas, Torsten, Luciani, Fabio

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Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa von Mouton, Laurence, Traunecker, Emmanuel, McElroy, Kerensa, Du Pasquier, Louis, Ebert, Dieter

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Quail Thrush (Cinclosoma) whole genome raw sequence reads (Illumina) von McElroy, Kerensa

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