Integrated analysis of multimodal single-cell data von Hao, Yuhan, Hao, Stephanie, Andersen-Nissen, Erica, Mauck, William M., Zheng, Shiwei, Butler, Andrew, Lee, Maddie J., Wilk, Aaron J., Darby, Charlotte, Zager, Michael, Hoffman, Paul, Stoeckius, Marlon, Papalexi, Efthymia, Mimitou, Eleni P., Jain, Jaison, Srivastava, Avi, Stuart, Tim, Fleming, Lamar M., Yeung, Bertrand, Rogers, Angela J., McElrath, Juliana M., Blish, Catherine A., Gottardo, Raphael, Smibert, Peter, Satija, Rahul

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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data von Finak, Greg, McDavid, Andrew, Yajima, Masanao, Deng, Jingyuan, Gersuk, Vivian, Shalek, Alex K, Slichter, Chloe K, Miller, Hannah W, McElrath, M Juliana, Prlic, Martin, Linsley, Peter S, Gottardo, Raphael

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mRNA vaccination boosts cross-variant neutralizing antibodies elicited by SARS-CoV-2 infection von Stamatatos, Leonidas, Czartoski, Julie, Wan, Yu-Hsin, Homad, Leah J., Rubin, Vanessa, Glantz, Hayley, Neradilek, Moni, Seydoux, Emilie, Jennewein, Madeleine F., MacCamy, Anna J., Feng, Junli, Mize, Gregory, De Rosa, Stephen C., Finzi, Andres, Lemos, Maria P., Cohen, Kristen W., Moodie, Zoe, McElrath, M. Juliana, McGuire, Andrew T.

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HIV-1 Integration Landscape during Latent and Active Infection von Cohn, Lillian B., Silva, Israel T., Oliveira, Thiago Y., Rosales, Rafael A., Parrish, Erica H., Learn, Gerald H., Hahn, Beatrice H., Czartoski, Julie L., McElrath, M. Juliana, Lehmann, Clara, Klein, Florian, Caskey, Marina, Walker, Bruce D., Siliciano, Janet D., Siliciano, Robert F., Jankovic, Mila, Nussenzweig, Michel C.

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Efficacy Trial of a DNA/rAd5 HIV-1 Preventive Vaccine von Hammer, Scott M, Sobieszczyk, Magdalena E, Janes, Holly, Karuna, Shelly T, Mulligan, Mark J, Grove, Doug, Koblin, Beryl A, Buchbinder, Susan P, Keefer, Michael C, Tomaras, Georgia D, Frahm, Nicole, Hural, John, Anude, Chuka, Graham, Barney S, Enama, Mary E, Adams, Elizabeth, DeJesus, Edwin, Novak, Richard M, Frank, Ian, Bentley, Carter, Ramirez, Shelly, Fu, Rong, Koup, Richard A, Mascola, John R, Nabel, Gary J, Montefiori, David C, Kublin, James, McElrath, M. Juliana, Corey, Lawrence, Gilbert, Peter B

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Induction of Immunity to Human Immunodeficiency Virus Type-1 by Vaccination von McElrath, M. Juliana, Haynes, Barton F.

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CXCR3 enables recruitment and site-specific bystander activation of memory CD8+ T cells von Maurice, Nicholas J., McElrath, M. Juliana, Andersen-Nissen, Erica, Frahm, Nicole, Prlic, Martin

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Persistent serum protein signatures define an inflammatory subcategory of long COVID von Talla, Aarthi, Vasaikar, Suhas V., Szeto, Gregory Lee, Lemos, Maria P., Czartoski, Julie L., MacMillan, Hugh, Moodie, Zoe, Cohen, Kristen W., Fleming, Lamar B., Thomson, Zachary, Okada, Lauren, Becker, Lynne A., Coffey, Ernest M., De Rosa, Stephen C., Newell, Evan W., Skene, Peter J., Li, Xiaojun, Bumol, Thomas F., Juliana McElrath, M., Torgerson, Troy R.

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An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus von Snijder, Joost, Ortego, Michael S., Weidle, Connor, Stuart, Andrew B., Gray, Matthew D., McElrath, M. Juliana, Pancera, Marie, Veesler, David, McGuire, Andrew T.

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Vaccination establishes clonal relatives of germinal center T cells in the blood of humans von Heit, Antje, Schmitz, Frank, Gerdts, Sarah, Flach, Britta, Moore, Miranda S, Perkins, Jonathan A, Robins, Harlan S, Aderem, Alan, Spearman, Paul, Tomaras, Georgia D, De Rosa, Stephen C, McElrath, M Juliana

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Calibration of two validated SARS-CoV-2 pseudovirus neutralization assays for COVID-19 vaccine evaluation von Huang, Yunda, Borisov, Oleg, Kee, Jia Jin, Carpp, Lindsay N., Wrin, Terri, Cai, Suqin, Sarzotti-Kelsoe, Marcella, McDanal, Charlene, Eaton, Amanda, Pajon, Rolando, Hural, John, Posavad, Christine M., Gill, Katherine, Karuna, Shelly, Corey, Lawrence, McElrath, M. Juliana, Gilbert, Peter B., Petropoulos, Christos J., Montefiori, David C.

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CXCL13 is a plasma biomarker of germinal center activity von Havenar-Daughton, Colin, Lindqvist, Madelene, Heit, Antje, Wu, Jennifer E., Reiss, Samantha M., Kendric, Kayla, Bélanger, Simon, Kasturi, Sudhir Pai, Landais, Elise, Akondy, Rama S., McGuire, Helen M., Bothwell, Marcella, Vagefi, Parsia A., Scully, Eileen, Tomarasm, Georgia D., Davis, Mark M., Poignard, Pascal, Ahmed, Rafi, Walker, Bruce D., Pulendran, Bali, McElrath, M. Juliana, Kaufmann, Daniel E., Crotty, Shane

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Immune-Correlates Analysis of an HIV-1 Vaccine Efficacy Trial von Haynes, Barton F, Gilbert, Peter B, McElrath, M. Juliana, Zolla-Pazner, Susan, Tomaras, Georgia D, Alam, S. Munir, Evans, David T, Montefiori, David C, Karnasuta, Chitraporn, Sutthent, Ruengpueng, Liao, Hua-Xin, DeVico, Anthony L, Lewis, George K, Williams, Constance, Pinter, Abraham, Fong, Youyi, Janes, Holly, DeCamp, Allan, Huang, Yunda, Rao, Mangala, Billings, Erik, Karasavvas, Nicos, Robb, Merlin L, Ngauy, Viseth, de Souza, Mark S, Paris, Robert, Ferrari, Guido, Bailer, Robert T, Soderberg, Kelly A, Andrews, Charla, Berman, Phillip W, Frahm, Nicole, De Rosa, Stephen C, Alpert, Michael D, Yates, Nicole L, Shen, Xiaoying, Koup, Richard A, Pitisuttithum, Punnee, Kaewkungwal, Jaranit, Nitayaphan, Sorachai, Rerks-Ngarm, Supachai, Michael, Nelson L, Kim, Jerome H

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Dissecting Polyclonal Vaccine-Induced Humoral Immunity against HIV Using Systems Serology von Chung, Amy W., Kumar, Manu P., Arnold, Kelly B., Yu, Wen Han, Schoen, Matthew K., Dunphy, Laura J., Suscovich, Todd J., Frahm, Nicole, Linde, Caitlyn, Mahan, Alison E., Hoffner, Michelle, Streeck, Hendrik, Ackerman, Margaret E., McElrath, M. Juliana, Schuitemaker, Hanneke, Pau, Maria G., Baden, Lindsey R., Kim, Jerome H., Michael, Nelson L., Barouch, Dan H., Lauffenburger, Douglas A., Alter, Galit

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HIV-1 vaccine-induced immunity in the test-of-concept Step Study: a case–cohort analysis von McElrath, M Juliana, MD, De Rosa, Stephen C, MD, Moodie, Zoe, PhD, Dubey, Sheri, MS, Kierstead, Lisa, PhD, Janes, Holly, PhD, Defawe, Olivier D, PhD, Carter, Donald K, BS, Hural, John, PhD, Akondy, Rama, PhD, Buchbinder, Susan P, MD, Robertson, Michael N, MD, Mehrotra, Devan V, PhD, Self, Steven G, PhD, Corey, Lawrence, MD, Shiver, John W, PhD, Casimiro, Danilo R, PhD

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Antibody Fc effector functions and IgG3 associate with decreased HIV-1 risk von Neidich, Scott D, Fong, Youyi, Li, Shuying S, Geraghty, Daniel E, Williamson, Brian D, Young, William Chad, Goodman, Derrick, Seaton, Kelly E, Shen, Xiaoying, Sawant, Sheetal, Zhang, Lu, deCamp, Allan C, Blette, Bryan S, Shao, Mengshu, Yates, Nicole L, Feely, Frederick, Pyo, Chul-Woo, Ferrari, Guido, Frank, Ian, Karuna, Shelly T, Swann, Edith M, Mascola, John R, Graham, Barney S, Hammer, Scott M, Sobieszczyk, Magdalena E, Corey, Lawrence, Janes, Holly E, McElrath, M Juliana, Gottardo, Raphael, Gilbert, Peter B, Tomaras, Georgia D

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Initial Events in Establishing Vaginal Entry and Infection by Human Immunodeficiency Virus Type-1 von Hladik, Florian, Sakchalathorn, Polachai, Ballweber, Lamar, Lentz, Gretchen, Fialkow, Michael, Eschenbach, David, McElrath, M. Juliana

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Benign ethnic neutropenia in a South African population, and its association with HIV acquisition and adverse event reporting in an HIV vaccine clinical trial von Mpofu, Rephaim, Otwombe, Kennedy, Mlisana, Koleka, Nchabeleng, Maphoshane, Allen, Mary, Kublin, James, McElrath, M. Juliana, Bekker, Linda-Gail, Churchyard, Gavin, Gray, Glenda, Laher, Fatima

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Vaginal Langerhans Cells Nonproductively Transporting HIV-1 Mediate Infection of T Cells von BALLWEBER, Lamar, ROBINSON, Barry, KREGER, Allison, FIALKOW, Michael, LENTZ, Gretchen, JULIANA MCELRATH, M, HLADIK, Florian

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Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): a double-blind, randomised, placebo-controlled, test-of-concept trial von Buchbinder, Susan P, MD, Mehrotra, Devan V, PhD, Duerr, Ann, MD, Fitzgerald, Daniel W, MD, Mogg, Robin, MS, Li, David, PhD, Gilbert, Peter B, Prof, Lama, Javier R, MD, Marmor, Michael, Prof, del Rio, Carlos, Prof, McElrath, M Juliana, Prof, Casimiro, Danilo R, PhD, Gottesdiener, Keith M, MD, Chodakewitz, Jeffrey A, MD, Corey, Lawrence, Prof, Robertson, Michael N, MD

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