Intracellular amyloid toxicity induces oxytosis/ferroptosis regulated cell death von Huang, Ling, McClatchy, Daniel B., Maher, Pamela, Liang, Zhibin, Diedrich, Jolene K., Soriano-Castell, David, Goldberg, Joshua, Shokhirev, Maxim, Yates, John R., Schubert, David, Currais, Antonio

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S-Nitrosylation of PINK1 Attenuates PINK1/Parkin-Dependent Mitophagy in hiPSC-Based Parkinson’s Disease Models von Oh, Chang-Ki, Sultan, Abdullah, Platzer, Joseph, Dolatabadi, Nima, Soldner, Frank, McClatchy, Daniel B., Diedrich, Jolene K., Yates, John R., Ambasudhan, Rajesh, Nakamura, Tomohiro, Jaenisch, Rudolf, Lipton, Stuart A.

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Using in vivo intact structure for system-wide quantitative analysis of changes in proteins von Son, Ahrum, Kim, Hyunsoo, Diedrich, Jolene K., Bamberger, Casimir, McClatchy, Daniel B., Lipton, Stuart A., Yates, John R.

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Direct Detection of Biotinylated Proteins by Mass Spectrometry von Schiapparelli, Lucio Matias, McClatchy, Daniel B, Liu, Han-Hsuan, Sharma, Pranav, Yates, John R, Cline, Hollis T

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Functional specialization of β-arrestin interactions revealed by proteomic analysis von Xiao, Kunhong, McClatchy, Daniel B, Shukla, Arun K, Zhao, Yang, Chen, Minyong, Shenoy, Sudha K, Yates, John R. III, Lefkowitz, Robert J

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Proteomic screen reveals diverse protein transport between connected neurons in the visual system von Schiapparelli, Lucio M., Sharma, Pranav, He, Hai-Yan, Li, Jianli, Shah, Sahil H., McClatchy, Daniel B., Ma, Yuanhui, Liu, Han-Hsuan, Goldberg, Jeffrey L., Yates, John R., Cline, Hollis T.

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Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer’s Disease-like Pathology von Savas, Jeffrey N., Wang, Yi-Zhi, DeNardo, Laura A., Martinez-Bartolome, Salvador, McClatchy, Daniel B., Hark, Timothy J., Shanks, Natalie F., Cozzolino, Kira A., Lavallée-Adam, Mathieu, Smukowski, Samuel N., Park, Sung Kyu, Kelly, Jeffery W., Koo, Edward H., Nakagawa, Terunaga, Masliah, Eliezer, Ghosh, Anirvan, Yates, John R.

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The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo von Schiapparelli, Lucio M., Shah, Sahil H., Ma, Yuanhui, McClatchy, Daniel B., Sharma, Pranav, Li, Jianli, Yates, John R., Goldberg, Jeffrey L., Cline, Hollis T.

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Role of the visual experience-dependent nascent proteome in neuronal plasticity von Liu, Han-Hsuan, McClatchy, Daniel B, Schiapparelli, Lucio, Shen, Wanhua, Yates, 3rd, John R, Cline, Hollis T

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Mocetinostat activates Krüppel-like factor 4 and protects against tissue destruction and inflammation in osteoarthritis von Kawata, Manabu, McClatchy, Daniel B, Diedrich, Jolene K, Olmer, Merissa, Johnson, Kristen A, Yates, John R, Lotz, Martin K

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Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development von McClatchy, Daniel B, Liao, Lujian, Park, Sung Kyu, Venable, John D, Yates, John R

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Differential proteomic analysis of mammalian tissues using SILAM von McClatchy, Daniel B, Liao, Lujian, Park, Sung Kyu, Xu, Tao, Lu, Bingwen, Yates Iii, John R

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Do Perineuronal Nets Stabilize the Engram of a Synaptic Circuit? von Lev-Ram, Varda, Lemieux, Sakina Palida, Deerinck, Thomas J, Bushong, Eric A, Perez, Alex J, Pritchard, Denise R, Toyama, Brandon H, Park, Sung Kyu R, McClatchy, Daniel B, Savas, Jeffrey N, Whitney, Michael, Adams, Stephen R, Ellisman, Mark H, Yates, 3rd, John, Tsien, Roger Y

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Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells von Yu, Nam-Kyung, McClatchy, Daniel B., Diedrich, Jolene K., Romero, Sarah, Choi, Jun-Hyeok, Martínez-Bartolomé, Salvador, Delahunty, Claire M., Muotri, Alysson R., Yates, John R.

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From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction von Natividad, Luis A, Buczynski, Matthew W, McClatchy, Daniel B, Yates, 3rd, John R

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Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results von Fernández-Costa, Carolina, Martínez-Bartolomé, Salvador, McClatchy, Daniel B, Saviola, Anthony J, Yu, Nam-Kyung, Yates, John R

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Motif-Specific Sampling of Phosphoproteomes von Ruse, Cristian I, McClatchy, Daniel B, Lu, Bingwen, Cociorva, Daniel, Motoyama, Akira, Park, Sung Kyu, Yates, John R

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DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity von Gamaleldin, Mariam, Yu, Nam-Kyung, Diedrich, Jolene K, Ma, Yuanhui, Wienand, Anne, McClatchy, Daniel B., Nykjaer, Anders, Nabavi, Sadegh, Yates, John R.

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Activity-Induced Cortical Glutamatergic Neuron Nascent Proteins von Schiapparelli, Lucio M, Xie, Yi, Sharma, Pranav, McClatchy, Daniel B, Ma, Yuanhui, Yates, 3rd, John R, Maximov, Anton, Cline, Hollis T

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Quantitative analysis of newly synthesized proteins von Ma, Yuanhui, McClatchy, Daniel B., Barkallah, Salim, Wood, William W., Yates, John R.

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