Inferring the shape of global epistasis von Otwinowski, Jakub, McCandlish, David M., Plotkin, Joshua B.

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MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect von Tareen, Ammar, Kooshkbaghi, Mahdi, Posfai, Anna, Ireland, William T, McCandlish, David M, Kinney, Justin B

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Robust genetic codes enhance protein evolvability von Rozhoňová, Hana, Martí-Gómez, Carlos, McCandlish, David M, Payne, Joshua L

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Designed active-site library reveals thousands of functional GFP variants von Weinstein, Jonathan Yaacov, Martí-Gómez, Carlos, Lipsh-Sokolik, Rosalie, Hoch, Shlomo Yakir, Liebermann, Demian, Nevo, Reinat, Weissman, Haim, Petrovich-Kopitman, Ekaterina, Margulies, David, Ivankov, Dmitry, McCandlish, David M., Fleishman, Sarel J.

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A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning von Tolstorukov, Michael Y., Colasanti, Andrew V., McCandlish, David M., Olson, Wilma K., Zhurkin, Victor B.

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Mutational Biases Influence Parallel Adaptation von Stoltzfus, Arlin, McCandlish, David M

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Modeling Evolution Using the Probability of Fixation: History and Implications von McCandlish, David M., Stoltzfus, Arlin

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Long-term evolution on complex fitness landscapes when mutation is weak von McCandlish, David M

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VISUALIZING FITNESS LANDSCAPES von McCandlish, David M.

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The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function von Storz, Jay F, Natarajan, Chandrasekhar, Signore, Anthony V, Witt, Christopher C, McCandlish, David M, Stoltzfus, Arlin

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Mutation bias and the predictability of evolution von Cano, Alejandro V, Gitschlag, Bryan L, Rozhoňová, Hana, Stoltzfus, Arlin, McCandlish, David M, Payne, Joshua L

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Higher-order epistasis and phenotypic prediction von Zhou, Juannan, Wong, Mandy S, Chen, Wei-Chia, Krainer, Adrian R, Kinney, Justin B, McCandlish, David M

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ON THE FINDABILITY OF GENOTYPES von McCandlish, David M.

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Specificity, cooperativity, synergy, and mechanisms of splice-modifying drugs von Ishigami, Yuma, Wong, Mandy S., Aldaravi, Carlos M.G., Kooshkbaghi, Mahdi, Ayaz, Andalus, McCandlish, David M., Krainer, Adrian R., Kinney, Justin B.

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Density estimation for ordinal biological sequences and its applications von Chen, Wei-Chia, Zhou, Juannan, McCandlish, David M

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Formal properties of the probability of fixation: Identities, inequalities and approximations von McCandlish, David M., Epstein, Charles L., Plotkin, Joshua B.

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System-specificity of genotype-phenotype map structure von McCandlish, David M.

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Density estimation for ordinal biological sequences and its applications von Chen, Wei-Chia, Zhou, Juannan, McCandlish, David M

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Detecting epistasis from an ensemble of adapting populations: DETECTING EPISTASIS von McCandlish, David M., Otwinowski, Jakub, Plotkin, Joshua B.

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Genomic and experimental evidence that ALK ATI does not predict single agent sensitivity to ALK inhibitors von Inam, Haider, Sokirniy, Ivan, Rao, Yiyun, Shah, Anushka, Naeemikia, Farnaz, O'Brien, Edward, Dong, Cheng, McCandlish, David M, Pritchard, Justin R

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