Comprehensive Profiling of Poor-Risk Paired Primary and Recurrent Triple-Negative Breast Cancers Reveals Immune Phenotype Shifts von Hutchinson, Katherine E, Yost, Susan E, Chang, Ching-Wei, Johnson, Radia Marie, Carr, Adrian R, McAdam, Paul R, Halligan, Daniel L, Chang, Chun-Chieh, Schmolze, Daniel, Liang, Jackson, Yuan, Yuan

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Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient von McAdam, Paul R, Holmes, Anne, Templeton, Kate E, Fitzgerald, J Ross

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Molecular longitudinal tracking of Mycobacterium abscessus spp. during chronic infection of the human lung von Kreutzfeldt, Kaj M, McAdam, Paul R, Claxton, Pauline, Holmes, Anne, Seagar, A Louise, Laurenson, Ian F, Fitzgerald, J Ross

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Frequent transmission of the Mycobacterium tuberculosis Beijing lineage and positive selection for the EsxW Beijing variant in Vietnam von Holt, Kathryn E., McAdam, Paul, Thai, Phan Vuong Khac, Thuong, Nguyen Thuy Thuong, Ha, Dang Thi Minh, Lan, Nguyen Ngoc, Lan, Nguyen Huu, Nhu, Nguyen Thi Quynh, Hai, Hoang Thanh, Ha, Vu Thi Ngoc, Thwaites, Guy, Edwards, David J., Nath, Artika P., Pham, Kym, Ascher, David B., Farrar, Jeremy, Khor, Chiea Chuen, Teo, Yik Ying, Inouye, Michael, Caws, Maxine, Dunstan, Sarah J.

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Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus von McAdam, Paul R., Templeton, Kate E., Edwards, Giles F., Holden, Matthew T. G., Feil, Edward J., Aanensen, David M., Bargawi, Hiba J. A., Spratt, Brian G., Bentley, Stephen D., Parkhill, Julian, Enright, Mark C., Holmes, Anne, Girvan, E. Kirsty, Godfrey, Paul A., Feldgarden, Michael, Kearns, Angela M., Rambaut, Andrew, Robinson, D. Ashley, Fitzgerald, J. Ross

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Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus von Spoor, Laura E, McAdam, Paul R, Weinert, Lucy A, Rambaut, Andrew, Hasman, Henrik, Aarestrup, Frank M, Kearns, Angela M, Larsen, Anders R, Skov, Robert L, Fitzgerald, J Ross

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A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic von Holden, Matthew T G, Hsu, Li-Yang, Kurt, Kevin, Weinert, Lucy A, Mather, Alison E, Harris, Simon R, Strommenger, Birgit, Layer, Franziska, Witte, Wolfgang, de Lencastre, Herminia, Skov, Robert, Westh, Henrik, Zemlicková, Helena, Coombs, Geoffrey, Kearns, Angela M, Hill, Robert L R, Edgeworth, Jonathan, Gould, Ian, Gant, Vanya, Cooke, Jonathan, Edwards, Giles F, McAdam, Paul R, Templeton, Kate E, McCann, Angela, Zhou, Zhemin, Castillo-Ramírez, Santiago, Feil, Edward J, Hudson, Lyndsey O, Enright, Mark C, Balloux, Francois, Aanensen, David M, Spratt, Brian G, Fitzgerald, J Ross, Parkhill, Julian, Achtman, Mark, Bentley, Stephen D, Nübel, Ulrich

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A single natural nucleotide mutation alters bacterial pathogen host tropism von Viana, David, Comos, María, McAdam, Paul R, Ward, Melissa J, Selva, Laura, Guinane, Caitriona M, González-Muñoz, Beatriz M, Tristan, Anne, Foster, Simon J, Fitzgerald, J Ross, Penadés, José R

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High-throughput sequencing for the study of bacterial pathogen biology von McAdam, Paul R, Richardson, Emily J, Fitzgerald, J Ross

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Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration von Uhlemann, Anne-Catrin, McAdam, Paul R, Sullivan, Sean B, Knox, Justin R, Khiabanian, Hossein, Rabadan, Raul, Davies, Peter R, Fitzgerald, J Ross, Lowy, Franklin D

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Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA von Ward, Melissa J, Goncheva, Mariya, Richardson, Emily, McAdam, Paul R, Raftis, Emma, Kearns, Angela, Daum, Robert S, David, Michael Z, Lauderdale, Tsai Ling, Edwards, Giles F, Nimmo, Graeme R, Coombs, Geoffrey W, Huijsdens, Xander, Woolhouse, Mark E J, Fitzgerald, J Ross

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Tumor Fusion Burden as a Hallmark of Immune Infiltration in Prostate Cancer von Wagle, Marie-Claire, Castillo, Joseph, Srinivasan, Shrividhya, Holcomb, Thomas, Yuen, Kobe C, Kadel, Edward E, Mariathasan, Sanjeev, Halligan, Daniel L, Carr, Adrian R, Bylesjo, Max, McAdam, Paul R, Lynagh, Sarah, Marien, Koen M, Kockx, Mark, Waumans, Yannick, Huang, Shih-Min A, Lackner, Mark R, Mounir, Zineb

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Outcomes Based on Plasma Biomarkers for the Phase 3 CELESTIAL Trial of Cabozantinib versus Placebo in Advanced Hepatocellular Carcinoma von Rimassa, Lorenza, Kelley, Robin Kate, Meyer, Tim, Ryoo, Baek-Yeol, Merle, Philippe, Park, Joong-Won, Blanc, Jean-Frederic, Lim, Ho Yeong, Tran, Albert, Chan, Yi-Wah, McAdam, Paul, Wang, Evelyn, Cheng, Ann-Lii, El-Khoueiry, Anthony B., Abou-Alfa, Ghassan K.

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Improving reverse vaccinology with a machine learning approach von Bowman, Brett N, McAdam, Paul R, Vivona, Sandro, Zhang, Jin X, Luong, Tiffany, Belew, Richard K, Sahota, Harpal, Guiney, Donald, Valafar, Faramarz, Fierer, Joshua, Woelk, Christopher H

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Recombination-mediated remodelling of host-pathogen interactions during Staphylococcus aureus niche adaptation von Spoor, Laura E, Richardson, Emily, Richards, Amy C, Wilson, Gillian J, Mendonca, Chriselle, Gupta, Ravi Kr, McAdam, Paul R, Nutbeam-Tuffs, Stephen, Black, Nikki S, O'Gara, James P, Lee, Chia Y, Corander, Jukka, Fitzgerald, J Ross

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Efficient national surveillance for health-care-associated infections von van Bunnik, Bram A D, Dr, Ciccolini, Mariano, PhD, Gibbons, Cheryl L, MSc, Edwards, Giles, MD, Fitzgerald, Ross, Prof, McAdam, Paul R, PhD, Ward, Melissa J, PhD, Laurenson, Ian F, MD, Woolhouse, Mark E J, Prof

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Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires' disease outbreak von McAdam, Paul R, Vander Broek, Charles W, Lindsay, Diane S J, Ward, Melissa J, Hanson, Mary F, Gillies, Michael, Watson, Mick, Stevens, Joanne M, Edwards, Giles F, Fitzgerald, J Ross

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Genomic epizootiology of a Brucella abortus outbreak in Northern Ireland (1997–2012) von Allen, Adrian R., Milne, Georgina, Drees, Kevin, Presho, Eleanor, Graham, Jordon, McAdam, Paul, Jones, Kerri, Wright, Lorraine, Skuce, Robin, Whatmore, Adrian M., Graham, Judith, Foster, Jeffrey T.

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A longitudinal survey of the gut virome of commercial broiler chickens from prehatch to slaughter von Trudgett, James, Brennan, David, Casement, Veronica, McAdam, Paul, Smyth, Victoria

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The effect of dietary fatty acid supplementation on gut microbiome development in weaning piglets von McKenna, Robyn, McAdam, Paul, Smyth, Victoria, Robinson, Mark, Cosby, Louise

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