Determining cell type abundance and expression from bulk tissues with digital cytometry von Newman, Aaron M., Steen, Chloé B., Liu, Chih Long, Gentles, Andrew J., Chaudhuri, Aadel A., Scherer, Florian, Khodadoust, Michael S., Esfahani, Mohammad S., Luca, Bogdan A., Steiner, David, Diehn, Maximilian, Alizadeh, Ash A.

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Detecting Liquid Remnants of Solid Tumors: Circulating Tumor DNA Minimal Residual Disease von Moding, Everett J, Nabet, Barzin Y, Alizadeh, Ash A, Diehn, Maximilian

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Robust enumeration of cell subsets from tissue expression profiles von Newman, Aaron M, Liu, Chih Long, Green, Michael R, Gentles, Andrew J, Feng, Weiguo, Xu, Yue, Hoang, Chuong D, Diehn, Maximilian, Alizadeh, Ash A

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The prognostic landscape of genes and infiltrating immune cells across human cancers von Gentles, Andrew J, Newman, Aaron M, Liu, Chih Long, Bratman, Scott V, Feng, Weiguo, Kim, Dongkyoon, Nair, Viswam S, Xu, Yue, Khuong, Amanda, Hoang, Chuong D, Diehn, Maximilian, West, Robert B, Plevritis, Sylvia K, Alizadeh, Ash A

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GFPT2 -Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma von Zhang, Weiruo, Bouchard, Gina, Yu, Alice, Shafiq, Majid, Jamali, Mehran, Shrager, Joseph B, Ayers, Kelsey, Bakr, Shaimaa, Gentles, Andrew J, Diehn, Maximilian, Quon, Andrew, West, Robert B, Nair, Viswam, van de Rijn, Matt, Napel, Sandy, Plevritis, Sylvia K

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Predicting HLA class II antigen presentation through integrated deep learning von Chen, Binbin, Khodadoust, Michael S., Olsson, Niclas, Wagar, Lisa E., Fast, Ethan, Liu, Chih Long, Muftuoglu, Yagmur, Sworder, Brian J., Diehn, Maximilian, Levy, Ronald, Davis, Mark M., Elias, Joshua E., Altman, Russ B., Alizadeh, Ash A.

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Atlas of clinically distinct cell states and ecosystems across human solid tumors von Luca, Bogdan A., Steen, Chloé B., Matusiak, Magdalena, Azizi, Armon, Varma, Sushama, Zhu, Chunfang, Przybyl, Joanna, Espín-Pérez, Almudena, Diehn, Maximilian, Alizadeh, Ash A., van de Rijn, Matt, Gentles, Andrew J., Newman, Aaron M.

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Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy von Wisdom, Amy J., Mowery, Yvonne M., Hong, Cierra S., Himes, Jonathon E., Nabet, Barzin Y., Qin, Xiaodi, Zhang, Dadong, Chen, Lan, Fradin, Hélène, Patel, Rutulkumar, Bassil, Alex M., Muise, Eric S., King, Daniel A., Xu, Eric S., Carpenter, David J., Kent, Collin L., Smythe, Kimberly S., Williams, Nerissa T., Luo, Lixia, Ma, Yan, Alizadeh, Ash A., Owzar, Kouros, Diehn, Maximilian, Bradley, Todd, Kirsch, David G.

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Detection and Diagnostic Utilization of Cellular and Cell-Free Tumor DNA von Dudley, Jonathan C, Diehn, Maximilian

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Enhanced detection of minimal residual disease by targeted sequencing of phased variants in circulating tumor DNA von Kurtz, David M., Soo, Joanne, Co Ting Keh, Lyron, Alig, Stefan, Chabon, Jacob J., Sworder, Brian J., Schultz, Andre, Jin, Michael C., Scherer, Florian, Garofalo, Andrea, Macaulay, Charles W., Hamilton, Emily G., Chen, Binbin, Olsen, Mari, Schroers-Martin, Joseph G., Craig, Alexander F. M., Moding, Everett J., Esfahani, Mohammad S., Liu, Chih Long, Dührsen, Ulrich, Hüttmann, Andreas, Casasnovas, René-Olivier, Westin, Jason R., Roschewski, Mark, Wilson, Wyndham H., Gaidano, Gianluca, Rossi, Davide, Diehn, Maximilian, Alizadeh, Ash A.

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Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma von Kurtz, David M, Scherer, Florian, Jin, Michael C, Soo, Joanne, Craig, Alexander F M, Esfahani, Mohammad Shahrokh, Chabon, Jacob J, Stehr, Henning, Liu, Chih Long, Tibshirani, Robert, Maeda, Lauren S, Gupta, Neel K, Khodadoust, Michael S, Advani, Ranjana H, Levy, Ronald, Newman, Aaron M, Dührsen, Ulrich, Hüttmann, Andreas, Meignan, Michel, Casasnovas, René-Olivier, Westin, Jason R, Roschewski, Mark, Wilson, Wyndham H, Gaidano, Gianluca, Rossi, Davide, Diehn, Maximilian, Alizadeh, Ash A

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Noninvasive Early Identification of Therapeutic Benefit from Immune Checkpoint Inhibition von Nabet, Barzin Y., Esfahani, Mohammad S., Moding, Everett J., Hamilton, Emily G., Chabon, Jacob J., Rizvi, Hira, Steen, Chloe B., Chaudhuri, Aadel A., Liu, Chih Long, Hui, Angela B., Almanza, Diego, Stehr, Henning, Gojenola, Linda, Bonilla, Rene F., Jin, Michael C., Jeon, Young-Jun, Tseng, Diane, Liu, Cailian, Merghoub, Taha, Neal, Joel W., Wakelee, Heather A., Padda, Sukhmani K., Ramchandran, Kavitha J., Das, Millie, Plodkowski, Andrew J., Yoo, Christopher, Chen, Emily L., Ko, Ryan B., Newman, Aaron M., Hellmann, Matthew D., Alizadeh, Ash A., Diehn, Maximilian

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The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma von Steen, Chloé B., Luca, Bogdan A., Esfahani, Mohammad S., Azizi, Armon, Sworder, Brian J., Nabet, Barzin Y., Kurtz, David M., Liu, Chih Long, Khameneh, Farnaz, Advani, Ranjana H., Natkunam, Yasodha, Myklebust, June H., Diehn, Maximilian, Gentles, Andrew J., Newman, Aaron M., Alizadeh, Ash A.

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Circulating Tumor DNA Analysis for Detection of Minimal Residual Disease After Chemoradiotherapy for Localized Esophageal Cancer von Azad, Tej D., Chaudhuri, Aadel A., Fang, Penny, Qiao, Yawei, Esfahani, Mohammad S., Chabon, Jacob J., Hamilton, Emily G., Yang, Yi D., Lovejoy, Alex, Newman, Aaron M., Kurtz, David M., Jin, Michael, Schroers-Martin, Joseph, Stehr, Henning, Liu, Chih Long, Hui, Angela Bik-Yu, Patel, Viren, Maru, Dipen, Lin, Steven H., Alizadeh, Ash A., Diehn, Maximilian

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Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers von Blakely, Collin M, Watkins, Thomas B K, Wu, Wei, Gini, Beatrice, Chabon, Jacob J, McCoach, Caroline E, McGranahan, Nicholas, Wilson, Gareth A, Birkbak, Nicolai J, Olivas, Victor R, Rotow, Julia, Maynard, Ashley, Wang, Victoria, Gubens, Matthew A, Banks, Kimberly C, Lanman, Richard B, Caulin, Aleah F, St John, John, Cordero, Anibal R, Giannikopoulos, Petros, Simmons, Andrew D, Mack, Philip C, Gandara, David R, Husain, Hatim, Doebele, Robert C, Riess, Jonathan W, Diehn, Maximilian, Swanton, Charles, Bivona, Trever G

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Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling von Chaudhuri, Aadel A, Chabon, Jacob J, Lovejoy, Alexander F, Newman, Aaron M, Stehr, Henning, Azad, Tej D, Khodadoust, Michael S, Esfahani, Mohammad Shahrokh, Liu, Chih Long, Zhou, Li, Scherer, Florian, Kurtz, David M, Say, Carmen, Carter, Justin N, Merriott, David J, Dudley, Jonathan C, Binkley, Michael S, Modlin, Leslie, Padda, Sukhmani K, Gensheimer, Michael F, West, Robert B, Shrager, Joseph B, Neal, Joel W, Wakelee, Heather A, Loo, Jr, Billy W, Alizadeh, Ash A, Diehn, Maximilian

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Inferring gene expression from cell-free DNA fragmentation profiles von Esfahani, Mohammad Shahrokh, Hamilton, Emily G., Mehrmohamadi, Mahya, Nabet, Barzin Y., Alig, Stefan K., King, Daniel A., Steen, Chloé B., Macaulay, Charles W., Schultz, Andre, Nesselbush, Monica C., Soo, Joanne, Schroers-Martin, Joseph G., Chen, Binbin, Binkley, Michael S., Stehr, Henning, Chabon, Jacob J., Sworder, Brian J., Hui, Angela B-Y, Frank, Matthew J., Moding, Everett J., Liu, Chih Long, Newman, Aaron M., Isbell, James M., Rudin, Charles M., Li, Bob T., Kurtz, David M., Diehn, Maximilian, Alizadeh, Ash A.

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Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction von Kurtz, David M., Esfahani, Mohammad S., Scherer, Florian, Soo, Joanne, Jin, Michael C., Liu, Chih Long, Newman, Aaron M., Dührsen, Ulrich, Hüttmann, Andreas, Casasnovas, Olivier, Westin, Jason R., Ritgen, Matthais, Böttcher, Sebastian, Langerak, Anton W., Roschewski, Mark, Wilson, Wyndham H., Gaidano, Gianluca, Rossi, Davide, Bahlo, Jasmin, Hallek, Michael, Tibshirani, Robert, Diehn, Maximilian, Alizadeh, Ash A.

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Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients von Chabon, Jacob J., Simmons, Andrew D., Lovejoy, Alexander F., Esfahani, Mohammad S., Newman, Aaron M., Haringsma, Henry J., Kurtz, David M., Stehr, Henning, Scherer, Florian, Karlovich, Chris A., Harding, Thomas C., Durkin, Kathleen A., Otterson, Gregory A., Purcell, W. Thomas, Camidge, D. Ross, Goldman, Jonathan W., Sequist, Lecia V., Piotrowska, Zofia, Wakelee, Heather A., Neal, Joel W., Alizadeh, Ash A., Diehn, Maximilian

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Predicting Radiotherapy Responses and Treatment Outcomes Through Analysis of Circulating Tumor DNA von Chaudhuri, Aadel A., MD, PhD, Binkley, Michael S., BA, Osmundson, Evan C., MD, PhD, Alizadeh, Ash A., MD, PhD, Diehn, Maximilian, MD, PhD

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