Eatomics: Shiny Exploration of Quantitative Proteomics Data von Kraus, Milena, Mathew Stephen, Mariet, Schapranow, Matthieu-P

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Using interpretability approaches to update “black-box” clinical prediction models: an external validation study in nephrology von da Cruz, Harry Freitas, Pfahringer, Boris, Martensen, Tom, Schneider, Frederic, Meyer, Alexander, Böttinger, Erwin, Schapranow, Matthieu-P.

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Proteomic Analysis Reveals Upregulation of ACE2 (Angiotensin-Converting Enzyme 2), the Putative SARS-CoV-2 Receptor in Pressure–but Not Volume-Overloaded Human Hearts von Stegbauer, Johannes, Kraus, Milena, Nordmeyer, Sarah, Kirchner, Marieluise, Ziehm, Matthias, Dommisch, Henrik, Kelle, Sebastian, Kelm, Marcus, Baczko, Istvan, Landmesser, Ulf, Tschöpe, Carsten, Knosalla, Christoph, Falcke, Martin, Schapranow, Matthieu-P., Regitz-Zagrosek, Vera, Mertins, Philipp, Kuehne, Titus

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Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards von Schapranow, Matthieu-P., Borchert, Florian, Bougatf, Nina, Hund, Hauke, Eils, Roland

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Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence von Borchert, Florian, Meister, Laura, Langer, Thomas, Follmann, Markus, Arnrich, Bert, Schapranow, Matthieu-P

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Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data von Slosarek, Tamara, Kraus, Milena, Schapranow, Matthieu-P., Boettinger, Erwin

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Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking von Borchert, Florian, Llorca, Ignacio, Schapranow, Matthieu-P.

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GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text von Steinwand, Sandro, Borchert, Florian, Winkler, Silvia, Schapranow, Matthieu-P.

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DEAME - Differential Expression Analysis Made Easy von Kraus, Milena, Hesse, Guenter, Slosarek, Tamara, Danner, Marius, Kesar, Ajay, Bhushan, Akshay, Schapranow, Matthieu-P.

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NephroCAGE-German-Canadian Consortium on AI for Improved Kidney Transplantation Outcome: Protocol for an Algorithm Development and Validation Study von Schapranow, Matthieu-P, Bayat, Mozhgan, Rasheed, Aadil, Naik, Marcel, Graf, Verena, Schmidt, Danilo, Budde, Klemens, Cardinal, Héloïse, Sapir-Pichhadze, Ruth, Fenninger, Franz, Sherwood, Karen, Keown, Paul, Günther, Oliver P, Pandl, Konstantin D, Leiser, Florian, Thiebes, Scott, Sunyaev, Ali, Niemann, Matthias, Schimanski, Andreas, Klein, Thomas

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Costs of authentic pharmaceuticals: research on qualitative and quantitative aspects of enabling anti-counterfeiting in RFID-aided supply chains von Schapranow, Matthieu-P., Müller, Jürgen, Zeier, Alexander, Plattner, Hasso

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High-Performance in-Memory Genome Data Analysis: How in-Memory Database Technology Accelerates Personalized Medicine von Plattner, Hasso, Schapranow, Matthieu-P

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Knowledge bases and software support for variant interpretation in precision oncology von Borchert, Florian, Mock, Andreas, Tomczak, Aurelie, Hügel, Jonas, Alkarkoukly, Samer, Knurr, Alexander, Volckmar, Anna-Lena, Stenzinger, Albrecht, Schirmacher, Peter, Debus, Jürgen, Jäger, Dirk, Longerich, Thomas, Fröhling, Stefan, Eils, Roland, Bougatf, Nina, Sax, Ulrich, Schapranow, Matthieu-P

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External Validation of a ``Black-Box'' Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences? von da Cruz, Harry F., Pfahringer, Boris, Schneider, Frederic, Meyer, Alexander, Schapranow, Matthieu-P.

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Disease- and sex-specific differences in patients with heart valve disease: a proteome study von Nordmeyer, Sarah, Kraus, Milena, Ziehm, Matthias, Kirchner, Marieluise, Schafstedde, Marie, Kelm, Marcus, Niquet, Sylvia, Stephen, Mariet Mathew, Baczko, Istvan, Knosalla, Christoph, Schapranow, Matthieu-P, Dittmar, Gunnar, Gotthardt, Michael, Falcke, Martin, Regitz-Zagrosek, Vera, Kuehne, Titus, Mertins, Philipp

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Improving biomedical entity linking for complex entity mentions with LLM-based text simplification von Borchert, Florian, Llorca, Ignacio, Schapranow, Matthieu-P

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HIG - An in-memory database platform enabling real-time analyses of genome data von Schapranow, Matthieu-P, Plattner, Hasso

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xMEN: a modular toolkit for cross-lingual medical entity normalization von Borchert, Florian, Llorca, Ignacio, Roller, Roland, Arnrich, Bert, Schapranow, Matthieu-P

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Low-cost mutual RFID authentication model using predefined password lists von Schapranow, M.-P., Muller, J., Enderlein, S., Helmich, M., Zeier, A.

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Knowledge bases and software support for variant interpretation in precision oncology von Borchert, Florian, Mock, Andreas, Tomczak, Aurelie, Hügel, Jonas, Alkarkoukly, Samer, Knurr, Alexander, Volckmar, Anna-Lena, Stenzinger, Albrecht, Schirmacher, Peter, Debus, Jürgen, Jäger, Dirk, Longerich, Thomas, Fröhling, Stefan, Eils, Roland, Bougatf, Nina, Sax, Ulrich, Schapranow, Matthieu-P

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