New Methods to Calculate Concordance Factors for Phylogenomic Datasets von Minh, Bui Quang, Hahn, Matthew W, Lanfear, Robert

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How reticulated are species? von Mallet, James, Besansky, Nora, Hahn, Matthew W

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CAFE 5 models variation in evolutionary rates among gene families von Mendes, Fábio K, Vanderpool, Dan, Fulton, Ben, Hahn, Matthew W

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The Neutral Theory in Light of Natural Selection von Kern, Andrew D, Hahn, Matthew W

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Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow von Cruickshank, Tami E, Hahn, Matthew W

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Irrational exuberance for resolved species trees von Hahn, Matthew W., Nakhleh, Luay

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Phylogenomic approaches to detecting and characterizing introgression von Hibbins, Mark S, Hahn, Matthew W

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Detection and Polarization of Introgression in a Five-Taxon Phylogeny von Pease, James B., Hahn, Matthew W.

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Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation von Pease, James B, Haak, David C, Hahn, Matthew W, Moyle, Leonie C

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Speciation as a sieve for ancestral polymorphism von Guerrero, Rafael F., Hahn, Matthew W.

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The Meaning and Measure of Concordance Factors in Phylogenomics von Lanfear, Robert, Hahn, Matthew W

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The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoes von Hibbins, Mark S, Hahn, Matthew W

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New Approaches for Inferring Phylogenies in the Presence of Paralogs von Smith, Megan L., Hahn, Matthew W.

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Gene Tree Discordance Causes Apparent Substitution Rate Variation von Mendes, Fábio K., Hahn, Matthew W.

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Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3 von Han, Mira V, Thomas, Gregg W C, Lugo-Martinez, Jose, Hahn, Matthew W

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Extensive error in the number of genes inferred from draft genome assemblies von Denton, James F, Lugo-Martinez, Jose, Tucker, Abraham E, Schrider, Daniel R, Warren, Wesley C, Hahn, Matthew W

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Why Concatenation Fails Near the Anomaly Zone von Mendes, Fábio K., Hahn, Matthew W.

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Sex determination: why so many ways of doing it? von Bachtrog, Doris, Mank, Judith E, Peichel, Catherine L, Kirkpatrick, Mark, Otto, Sarah P, Ashman, Tia-Lynn, Hahn, Matthew W, Kitano, Jun, Mayrose, Itay, Ming, Ray, Perrin, Nicolas, Ross, Laura, Valenzuela, Nicole, Vamosi, Jana C

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Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression von Vanderpool, Dan, Minh, Bui Quang, Lanfear, Robert, Hughes, Daniel, Murali, Shwetha, Harris, R Alan, Raveendran, Muthuswamy, Muzny, Donna M, Hibbins, Mark S, Williamson, Robert J, Gibbs, Richard A, Worley, Kim C, Rogers, Jeffrey, Hahn, Matthew W

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Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae von Ayala, Diego, Zhang, Simo, Chateau, Mathieu, Fouet, Caroline, Morlais, Isabelle, Costantini, Carlo, Hahn, Matthew W., Besansky, Nora J.

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