The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut von Gregory, Ann C., Zablocki, Olivier, Zayed, Ahmed A., Howell, Allison, Bolduc, Benjamin, Sullivan, Matthew B.

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The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology von Hurwitz, Bonnie L, Sullivan, Matthew B

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Rising to the challenge: accelerated pace of discovery transforms marine virology von Brum, Jennifer R., Sullivan, Matthew B.

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Lysogeny in nature: mechanisms, impact and ecology of temperate phages von Howard-Varona, Cristina, Hargreaves, Katherine R, Abedon, Stephen T, Sullivan, Matthew B

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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks von Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H., Roux, Simon, Adriaenssens, Evelien M., Brister, J. Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B.

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VirSorter: mining viral signal from microbial genomic data von Roux, Simon, Enault, Francois, Hurwitz, Bonnie L, Sullivan, Matthew B

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DRAM for distilling microbial metabolism to automate the curation of microbiome function von Shaffer, Michael, Borton, Mikayla A., McGivern, Bridget B., Zayed, Ahmed A., La Rosa, Sabina Leanti, Solden, Lindsey M., Liu, Pengfei, Narrowe, Adrienne B., Rodriguez-Ramos, Josue, Bolduc, Benjamin, Gazitua, M. Consuelo, Daly, Rebecca A., Smith, Garrett J., Vik, Dean R., Pope, Phil B., Sullivan, Matthew B., Roux, Simon, Wrighton, Kelly C.

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Viral dark matter and virus-host interactions resolved from publicly available microbial genomes von Roux, Simon, Hallam, Steven J, Woyke, Tanja, Sullivan, Matthew B

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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses von Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, Gazitua, M. Consuelo, Vik, Dean, Sullivan, Matthew B., Roux, Simon

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Tara Oceans: towards global ocean ecosystems biology von Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban

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Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics von Brum, Jennifer R, Hurwitz, Bonnie L, Schofield, Oscar, Ducklow, Hugh W, Sullivan, Matthew B

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Revisiting the rules of life for viruses of microorganisms von Correa, Adrienne M. S., Howard-Varona, Cristina, Coy, Samantha R., Buchan, Alison, Sullivan, Matthew B., Weitz, Joshua S.

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Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages von Kieft, Kristopher, Zhou, Zhichao, Anderson, Rika E., Buchan, Alison, Campbell, Barbara J., Hallam, Steven J., Hess, Matthias, Sullivan, Matthew B., Walsh, David A., Roux, Simon, Anantharaman, Karthik

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Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome von Hurwitz, Bonnie L, Brum, Jennifer R, Sullivan, Matthew B

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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses von Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.

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Interrogating the viral dark matter of the rumen ecosystem with a global virome database von Yan, Ming, Pratama, Akbar Adjie, Somasundaram, Sripoorna, Li, Zongjun, Jiang, Yu, Sullivan, Matthew B., Yu, Zhongtang

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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study von Kang, Dae-Wook, Adams, James B, Gregory, Ann C, Borody, Thomas, Chittick, Lauren, Fasano, Alessio, Khoruts, Alexander, Geis, Elizabeth, Maldonado, Juan, McDonough-Means, Sharon, Pollard, Elena L, Roux, Simon, Sadowsky, Michael J, Lipson, Karen Schwarzberg, Sullivan, Matthew B, Caporaso, J Gregory, Krajmalnik-Brown, Rosa

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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity von Roux, Simon, Emerson, Joanne B, Eloe-Fadrosh, Emiley A, Sullivan, Matthew B

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Numerous cultivated and uncultivated viruses encode ribosomal proteins von Mizuno, Carolina M., Guyomar, Charlotte, Roux, Simon, Lavigne, Régis, Rodriguez-Valera, Francisco, Sullivan, Matthew B., Gillet, Reynald, Forterre, Patrick, Krupovic, Mart

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vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria von Bolduc, Benjamin, Jang, Ho Bin, Doulcier, Guilhem, You, Zhi-Qiang, Roux, Simon, Sullivan, Matthew B

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