Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals von Noor, Kawsar, Roguski, Lukasz, Bai, Xi, Handy, Alex, Klapaukh, Roman, Folarin, Amos, Romao, Luis, Matteson, Joshua, Lea, Nathan, Zhu, Leilei, Asselbergs, Folkert W, Wong, Wai Keong, Shah, Anoop, Dobson, Richard Jb

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Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals von Noor, Kawsar, Roguski, Lukasz, Bai, Xi, Handy, Alex, Klapaukh, Roman, Folarin, Amos, Romao, Luis, Matteson, Joshua, Lea, Nathan, Zhu, Leilei, Asselbergs, Folkert W, Wong, Wai Keong, Shah, Anoop, Dobson, Richard Jb

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Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals von Noor, Kawsar, Roguski, Lukasz, Handy, Alex, Klapaukh, Roman, Folarin, Amos, Romao, Luis, Matteson, Joshua, Lea, Nathan, Zhu, Leilei, Wong, Wai Keong, Shah, Anoop, Dobson, Richard J

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Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals von Noor, Kawsar, Roguski, Lukasz, Handy, Alex, Klapaukh, Roman, Folarin, Amos, Romao, Luis, Matteson, Joshua, Lea, Nathan, Zhu, Leilei, Wong, Wai Keong, Shah, Anoop, Dobson, Richard J

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Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations von Gangavarapu, Karthik, Latif, Alaa Abdel, Mullen, Julia L., Alkuzweny, Manar, Hufbauer, Emory, Tsueng, Ginger, Haag, Emily, Zeller, Mark, Aceves, Christine M., Zaiets, Karina, Cano, Marco, Zhou, Xinghua, Qian, Zhongchao, Sattler, Rachel, Matteson, Nathaniel L., Levy, Joshua I., Lee, Raphael T. C., Freitas, Lucas, Maurer-Stroh, Sebastian, Suchard, Marc A., Wu, Chunlei, Su, Andrew I., Andersen, Kristian G., Hughes, Laura D.

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An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar von Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, De Jesus, Jaqueline Goes, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Van Rompay, Koen K A, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G

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The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 von Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O

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Developing and Evaluating Deep Neural Network-Based Denoising for Nanoparticle TEM Images with Ultra-Low Signal-to-Noise von Vincent, Joshua L., Manzorro, Ramon, Mohan, Sreyas, Tang, Binh, Sheth, Dev Y., Simoncelli, Eero P., Matteson, David S., Fernandez-Granda, Carlos, Crozier, Peter A.

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Exploring Blob Detection to Determine Atomic Column Positions and Intensities in Time-Resolved TEM Images with Ultra-Low Signal-to-Noise von Manzorro, Ramon, Xu, Yuchen, Vincent, Joshua L., Rivera, Roberto, Matteson, David S., Crozier, Peter A.

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Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission von Karthikeyan, Smruthi, Levy, Joshua I., De Hoff, Peter, Humphrey, Greg, Birmingham, Amanda, Jepsen, Kristen, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Tribelhorn, Caitlin E., Tsai, Rebecca, Aigner, Stefan, Moshiri, Niema, Henson, Benjamin, Mark, Adam M., Hakim, Abbas, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Chacón, Marisol, Cresini, Evelyn S., Eisner, Emily R., Lastrella, Alma L., Lawrence, Elijah S., Marotz, Clarisse A., Ngo, Toan T., Ostrander, Tyler, Plascencia, Ashley, Salido, Rodolfo A., Seaver, Phoebe, Smoot, Elizabeth W., McDonald, Daniel, Neuhard, Robert M., Scioscia, Angela L., Satterlund, Alysson M., Simmons, Elizabeth H., Abelman, Dismas B., Brenner, David, Buckley, Anne, Gattas, Jeffrey, Gonias, Steven L., Hale, Matt, Ikeda, Lydia, Jhaveri, Hemlata, Kremer, Brendan, McLawhon, Ronald W., Ouillet, Pierre, Park, Daniel, Pradenas, Allorah, Riggs, Lindsay, Sanders, Alison, Sollenberger, Bradley, White, Benjamin, Winbush, Terri, Aceves, Christine M., Anderson, Catelyn, Gangavarapu, Karthik, Hufbauer, Emory, Kurzban, Ezra, Lee, Justin, Matteson, Nathaniel L., Parker, Edyth, Perkins, Sarah A., Ramesh, Karthik S., Schwab, Madison A., Wohl, Shirlee, Nicholson, Laura, McHardy, Ian H., Hobbs, Charlotte A., Bakhtar, Omid, Mendoza, Art, Becker, David, Cirulli, Elizabeth T., Isaksson, Magnus, Schiabor Barrett, Kelly M., Washington, Nicole L., Malone, John D., Schafer, Ashleigh Murphy, Fielding-Miller, Rebecca, Garfein, Richard S., Gaines, Tommi, Anderson, Cheryl, Martin, Natasha K., Schooley, Robert, Austin, Brett, Kingsmore, Stephen F., Lee, William, Shah, Seema, McDonald, Eric, Yu, Alexander T., Zeller, Mark, Fisch, Kathleen M., Longhurst, Christopher, Maysent, Patty, Pride, David, Khosla, Pradeep K., Laurent, Louise C., Yeo, Gene W., Andersen, Kristian G., Knight, Rob

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Methotrexate and rheumatoid arthritis associated interstitial lung disease von Juge, Pierre-Antoine, Lee, Joyce S, Lau, Jessica, Kawano-Dourado, Leticia, Rojas Serrano, Jorge, Sebastiani, Marco, Koduri, Gouri, Matteson, Eric, Bonfiglioli, Karina, Sawamura, Marcio, Kairalla, Ronaldo, Cavagna, Lorenzo, Bozzalla Cassione, Emanuele, Manfredi, Andreina, Mejia, Mayra, Rodríguez-Henriquez, Pedro, González-Pérez, Montserrat I, Falfán-Valencia, Ramcés, Buendia-Roldán, Ivette, Pérez-Rubio, Gloria, Ebstein, Esther, Gazal, Steven, Borie, Raphaël, Ottaviani, Sébastien, Kannengiesser, Caroline, Wallaert, Benoît, Uzunhan, Yurdagul, Nunes, Hilario, Valeyre, Dominique, Saidenberg-Kermanac'h, Nathalie, Boissier, Marie-Christophe, Wemeau-Stervinou, Lidwine, Flipo, René-Marc, Marchand-Adam, Sylvain, Richette, Pascal, Allanore, Yannick, Dromer, Claire, Truchetet, Marie-Elise, Richez, Christophe, Schaeverbeke, Thierry, Lioté, Huguette, Thabut, Gabriel, Deane, Kevin D, Solomon, Joshua J, Doyle, Tracy, Ryu, Jay H, Rosas, Ivan, Holers, V Michael, Boileau, Catherine, Debray, Marie-Pierre, Porcher, Raphaël, Schwartz, David A, Vassallo, Robert, Crestani, Bruno, Dieudé, Philippe

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Deep Denoising for Scientific Discovery: A Case Study in Electron Microscopy von Mohan, Sreyas, Manzorro, Ramon, Vincent, Joshua L., Tang, Binh, Sheth, Dev Y., Simoncelli, Eero P., Matteson, David S., Crozier, Peter A., Fernandez-Granda, Carlos

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Early Feasibility Assessment: A Method for Accurately Predicting Biotherapeutic Dosing to Inform Early Drug Discovery Decisions von Marcantonio, Diana H, Matteson, Andrew, Presler, Marc, Burke, John M, Hagen, David R, Hua, Fei, Apgar, Joshua F

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Outcome measurement instrument selection for lung physiology in systemic sclerosis associated interstitial lung disease: A systematic review using the OMERACT filter 2.1 process von Roofeh, David, Barratt, Shaney L., Wells, Athol U, Kawano-Dourado, Leticia, Tashkin, Donald, Strand, Vibeke, Seibold, James, Proudman, Susanna, Brown, Kevin K, Dellaripa, Paul F, Doyle, Tracy, Leonard, Thomas, Matteson, Eric L, Oddis, Chester V, Solomon, Joshua J, Sparks, Jeffrey A, Vassallo, Robert, Maxwell, Lara, Beaton, Dorcas, Christensen, Robin, Townsend, Whitney, Khanna, Dinesh

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Comparison of dose selection based on target engagement versus inhibition of receptor–ligand interaction for checkpoint inhibitors von Head, Sarah A., Johnson, Carter, Sarkar, Saheli, Matteson, Andrew, Marcantonio, Diana H., Hua, Fei, Burke, John M., Apgar, Joshua F., Flowers, David

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Describing Atomic-Level Fluxional Behavior in Nanoparticles von Manzorro, Ramon, Vincent, Joshua, Matteson, David, Xu, Yuchen, Crozier, Peter

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A simple carbon cycle representation for economic and policy analyses von Glotter, Michael J., Pierrehumbert, Raymond T., Elliott, Joshua W., Matteson, Nathan J., Moyer, Elisabeth J.

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Spatial topology of organelle is a new breast cancer cell classifier von Wang, Ling, Goldwag, Joshua, Bouyea, Megan, Barra, Jonathan, Matteson, Kailie, Maharjan, Niva, Eladdadi, Amina, Embrechts, Mark J., Intes, Xavier, Kruger, Uwe, Barroso, Margarida

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A systems pharmacology model for gene therapy in sickle cell disease von Zheng, Bo, Wille, Lucia, Peppel, Karsten, Hagen, David, Matteson, Andrew, Ahlers, Jeffrey, Schaff, James, Hua, Fei, Yuraszeck, Theresa, Cobbina, Enoch, Apgar, Joshua F., Burke, John M., Roberts, John, Das, Raibatak

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Quantifying fluxional behavior in catalytic CeO 2 nanoparticles: toward thermodynamic insight into the stability of surface atomic structures von Manzorro, Ramon, Vincent, Joshua, Xu, Yuchen, Lawrence, Ethan L., Matteson, David, Crozier, Peter

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