3D genome organization contributes to genome instability at fragile sites von Sarni, Dan, Sasaki, Takayo, Irony Tur-Sinai, Michal, Miron, Karin, Rivera-Mulia, Juan Carlos, Magnuson, Brian, Ljungman, Mats, Gilbert, David M., Kerem, Batsheva

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The DNA damage response-Repair or despair? von Ljungman, Mats

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The Transcription Stress Response von Ljungman, Mats

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Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA von Paulsen, Michelle T., Veloso, Artur, Prasad, Jayendra, Bedi, Karan, Ljungman, Emily A., Magnuson, Brian, Wilson, Thomas E., Ljungman, Mats

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Dissecting regulatory pathways for transcription recovery following DNA damage reveals a non-canonical function of the histone chaperone HIRA von Bouvier, Déborah, Ferrand, Juliette, Chevallier, Odile, Paulsen, Michelle T., Ljungman, Mats, Polo, Sophie E.

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Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing von Selvanathan, Saravana P., Graham, Garrett T., Erkizan, Hayriye V., Dirksen, Uta, Natarajan, Thanemozhi G., Dakic, Aleksandra, Yu, Songtao, Liu, Xuefeng, Paulsen, Michelle T., Ljungman, Mats E., Wu, Cathy H., Lawlor, Elizabeth R., Üren, Aykut, Toretsky, Jeffrey A.

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Human prostate luminal cell differentiation requires NOTCH3 induction by p38-MAPK and MYC von Frank, Sander B, Berger, Penny L, Ljungman, Mats, Miranti, Cindy K

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Functional organization of the human 4D Nucleome von Chen, Haiming, Jie Chen, Lindsey A. Muir, Scott Ronquist, Walter Meixner, Mats Ljungman, Thomas Ried, Stephen Smale, Indika Rajapakse

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Large transcription units unify copy number variants and common fragile sites arising under replication stress von Wilson, Thomas E, Arlt, Martin F, Park, So Hae, Rajendran, Sountharia, Paulsen, Michelle, Ljungman, Mats, Glover, Thomas W

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A damaged genome’s transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks von Iannelli, Fabio, Galbiati, Alessandro, Capozzo, Ilaria, Nguyen, Quan, Magnuson, Brian, Michelini, Flavia, D’Alessandro, Giuseppina, Cabrini, Matteo, Roncador, Marco, Francia, Sofia, Crosetto, Nicola, Ljungman, Mats, Carninci, Piero, d’Adda di Fagagna, Fabrizio

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HNF1A is a novel oncogene that regulates human pancreatic cancer stem cell properties von Abel, Ethan V, Goto, Masashi, Magnuson, Brian, Abraham, Saji, Ramanathan, Nikita, Hotaling, Emily, Alaniz, Anthony A, Kumar-Sinha, Chandan, Dziubinski, Michele L, Urs, Sumithra, Wang, Lidong, Shi, Jiaqi, Waghray, Meghna, Ljungman, Mats, Crawford, Howard C, Simeone, Diane M

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The Long Non-Coding RNA PCAT-1 Promotes Prostate Cancer Cell Proliferation through cMyc von Prensner, John R, Chen, Wei, Han, Sumin, Iyer, Matthew K, Cao, Qi, Kothari, Vishal, Evans, Joseph R, Knudsen, Karen E, Paulsen, Michelle T, Ljungman, Mats, Lawrence, Theodore S, Chinnaiyan, Arul M, Feng, Felix Y

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Cotranscriptional splicing efficiencies differ within genes and between cell types von Bedi, Karan, Magnuson, Brian, Narayanan, Ishwarya Venkata, Paulsen, Michelle T., Wilson, Thomas E., Ljungman, Mats

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Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response von Paulsen, Michelle T., Veloso, Artur, Prasad, Jayendra, Bedi, Karan, Ljungman, Emily A., Tsan, Ya-Chun, Chang, Ching-Wei, Tarrier, Brendan, Washburn, Joseph G., Lyons, Robert, Robinson, Daniel R., Kumar-Sinha, Chandan, Wilson, Thomas E., Ljungman, Mats

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Transcription and genome integrity von Ljungman, Mats

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A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair von van den Heuvel, Diana, Spruijt, Cornelia G., González-Prieto, Román, Kragten, Angela, Paulsen, Michelle T., Zhou, Di, Wu, Haoyu, Apelt, Katja, van der Weegen, Yana, Yang, Kevin, Dijk, Madelon, Daxinger, Lucia, Marteijn, Jurgen A., Vertegaal, Alfred C. O., Ljungman, Mats, Vermeulen, Michiel, Luijsterburg, Martijn S.

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ATDC/TRIM29 Drives Invasive Bladder Cancer Formation through miRNA-Mediated and Epigenetic Mechanisms von Palmbos, Phillip L, Wang, Lidong, Yang, Huibin, Wang, Yin, Leflein, Jacob, Ahmet, McKenzie L, Wilkinson, John E, Kumar-Sinha, Chandan, Ney, Gina M, Tomlins, Scott A, Daignault, Stephanie, Kunju, Lakshmi P, Wu, Xue-Ru, Lotan, Yair, Liebert, Monica, Ljungman, Mats E, Simeone, Diane M

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ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation von van der Weegen, Yana, de Lint, Klaas, van den Heuvel, Diana, Nakazawa, Yuka, Mevissen, Tycho E. T., van Schie, Janne J. M., San Martin Alonso, Marta, Boer, Daphne E. C., González-Prieto, Román, Narayanan, Ishwarya V., Klaassen, Noud H. M., Wondergem, Annelotte P., Roohollahi, Khashayar, Dorsman, Josephine C., Hara, Yuichiro, Vertegaal, Alfred C. O., de Lange, Job, Walter, Johannes C., Noordermeer, Sylvie M., Ljungman, Mats, Ogi, Tomoo, Wolthuis, Rob M. F., Luijsterburg, Martijn S.

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Transcriptional and post-transcriptional regulation of the ionizing radiation response by ATM and p53 von Venkata Narayanan, Ishwarya, Paulsen, Michelle T., Bedi, Karan, Berg, Nathan, Ljungman, Emily A., Francia, Sofia, Veloso, Artur, Magnuson, Brian, di Fagagna, Fabrizio d’Adda, Wilson, Thomas E., Ljungman, Mats

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Dial 9-1-1 for p53: Mechanisms of p53 Activation by Cellular Stress von Ljungman, Mats

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