Sequence similarity governs generalizability of de novo deep learning models for RNA secondary structure prediction von Qiu, Xiangyun

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix von Havgaard, Jakob H, Torarinsson, Elfar, Gorodkin, Jan

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STarMir Tools for Prediction of microRNA Binding Sites von Kanoria, Shaveta, Rennie, William, Liu, Chaochun, Carmack, C. Steven, Lu, Jun, Ding, Ye

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RNA Structure Determination: Methods and Protocols von Turner, Douglas H, Mathews, David H

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Predicting RNA–RNA Interactions Using RNAstructure von DiChiacchio, Laura, Mathews, David H.

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Experiment-Assisted Secondary Structure Prediction with RNAstructure von Xu, Zhenjiang Zech, Mathews, David H.

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Secondary Structure Prediction of Single Sequences Using RNAstructure von Xu, Zhenjiang Zech, Mathews, David H.

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Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq) von Watters, Kyle E., Lucks, Julius B.

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Exploring Alternative RNA Structure Sets Using MC-Flashfold and db2cm von Dallaire, Paul, Major, François

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A Method to Predict the Structure and Stability of RNA/RNA Complexes von Xu, Xiaojun, Chen, Shi-Jie

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High-Throughput Nuclease Probing of RNA Structures Using FragSeq von Uzilov, Andrew V., Underwood, Jason G.

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Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server von Yesselman, Joseph D., Das, Rhiju

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RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS von Piatkowski, Pawel, Kasprzak, Joanna M., Kumar, Deepak, Magnus, Marcin, Chojnowski, Grzegorz, Bujnicki, Janusz M.

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Prediction of Secondary Structures Conserved in Multiple RNA Sequences von Xu, Zhenjiang Zech, Mathews, David H.

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RNA Secondary Structure Determination by NMR von Chen, Jonathan L., Bellaousov, Stanislav, Turner, Douglas H.

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NMR Methods for Characterization of RNA Secondary Structure von Kennedy, Scott D.

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The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures von Jenkins, Jermaine L., Wedekind, Joseph E.

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Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo von Fechter, Pierre, Parmentier, Delphine, Wu, ZongFu, Fuchsbauer, Olivier, Romby, Pascale, Marzi, Stefano

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Crumple: An Efficient Tool to Explore Thoroughly the RNA Folding Landscape von Guerra, Ivan, Schroeder, Susan J.

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Automated RNA 3D Structure Prediction with RNAComposer von Biesiada, Marcin, Purzycka, Katarzyna J., Szachniuk, Marta, Blazewicz, Jacek, Adamiak, Ryszard W.

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