RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes von Braisted, John, Patt, Andrew, Tindall, Cole, Sheils, Timothy, Neyra, Jorge, Spencer, Kyle, Eicher, Tara, Mathé, Ewy A

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MYC-driven accumulation of 2-hydroxyglutarate is associated with breast cancer prognosis von Terunuma, Atsushi, Putluri, Nagireddy, Mishra, Prachi, Mathé, Ewy A, Dorsey, Tiffany H, Yi, Ming, Wallace, Tiffany A, Issaq, Haleem J, Zhou, Ming, Killian, J Keith, Stevenson, Holly S, Karoly, Edward D, Chan, King, Samanta, Susmita, Prieto, DaRue, Hsu, Tiffany Y T, Kurley, Sarah J, Putluri, Vasanta, Sonavane, Rajni, Edelman, Daniel C, Wulff, Jacob, Starks, Adrienne M, Yang, Yinmeng, Kittles, Rick A, Yfantis, Harry G, Lee, Dong H, Ioffe, Olga B, Schiff, Rachel, Stephens, Robert M, Meltzer, Paul S, Veenstra, Timothy D, Westbrook, Thomas F, Sreekumar, Arun, Ambs, Stefan

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Clustering rare diseases within an ontology-enriched knowledge graph von Sanjak, Jaleal, Binder, Jessica, Yadaw, Arjun Singh, Zhu, Qian, Mathé, Ewy A

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Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics von Li, Yang, Ma, Anjun, Mathé, Ewy A., Li, Lang, Liu, Bingqiang, Ma, Qin

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The Association of MicroRNA Expression with Prognosis and Progression in Early-Stage, Non-Small Cell Lung Adenocarcinoma: A Retrospective Analysis of Three Cohorts von SAITO, Motonobu, SCHETTER, Aaron J, HARRIS, Curtis C, MOLLERUP, Steen, KOHNO, Takashi, SKAUG, Vidar, BOWMAN, Elise D, MATHE, Ewy A, TAKENOSHITA, Seiichi, YOKOTA, Jun, HAUGEN, Aage

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Pharos 2023: an integrated resource for the understudied human proteome von Kelleher, Keith J, Sheils, Timothy K, Mathias, Stephen L, Yang, Jeremy J, Metzger, Vincent T, Siramshetty, Vishal B, Nguyen, Dac-Trung, Jensen, Lars Juhl, Vidović, Dušica, Schürer, Stephan C, Holmes, Jayme, Sharma, Karlie R, Pillai, Ajay, Bologa, Cristian G, Edwards, Jeremy S, Mathé, Ewy A, Oprea, Tudor I

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MicroRNA Expression in Squamous Cell Carcinoma and Adenocarcinoma of the Esophagus: Associations with Survival von MATHE, Ewy A, GIANG HUONG NGUYEN, ALTORKI, Nasser K, CASSON, Alan G, LIU, Chang-Gong, XIN WEI WANG, YANAIHARA, Nozomu, HAGIWARA, Nobutoshi, DANNENBERG, Andrew J, MIYASHITA, Masao, CROCE, Carlo M, HARRIS, Curtis C, BOWMAN, Elise D, YIQIANG ZHAO, BUDHU, Anuradha, SCHETTER, Aaron J, BRAUN, Rosemary, REIMERS, Mark, KUMAMOTO, Kensuke, HUGHES, Duncan

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ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data von Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A

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MiR-21 is an EGFR-regulated anti-apoptotic factor in lung cancer in never-smokers von Seike, Masahiro, Goto, Akiteru, Okano, Tetsuya, Bowman, Elise D, Schetter, Aaron J, Horikawa, Izumi, Mathe, Ewy A, Jen, Jin, Yang, Ping, Sugimura, Haruhiko, Gemma, Akihiko, Kudoh, Shoji, Croce, Carlo M, Harris, Curtis C

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Association of Inflammation-Related and microRNA Gene Expression with Cancer-Specific Mortality of Colon Adenocarcinoma von SCHETTER, Aaron J, GIANG HUONG NGUYEN, BOWMAN, Elise D, MATHE, Ewy A, SIU TSAN YUEN, HAWKES, Jason E, CROCE, Carlo M, SUET YI LEUNG, HARRIS, Curtis C

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Experimental and Study Design Considerations for Uncovering Oncometabolites von Haznadar, Majda, Mathé, Ewy A.

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Saliva and Lung Microbiome Associations with Electronic Cigarette Use and Smoking von Ying, Kevin L, Brasky, Theodore M, Freudenheim, Jo L, McElroy, Joseph P, Nickerson, Quentin A, Song, Min-Ae, Weng, Daniel Y, Wewers, Mark D, Whiteman, Noah B, Mathe, Ewy A, Shields, Peter G

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MDM2-Dependent Rewiring of Metabolomic and Lipidomic Profiles in Dedifferentiated Liposarcoma Models von Patt, Andrew, Demoret, Bryce, Stets, Colin, Bill, Kate-Lynn, Smith, Philip, Vijay, Anitha, Patterson, Andrew, Hays, John, Hoang, Mindy, Chen, James L., Mathé, Ewy A.

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RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites von Zhang, Bofei, Hu, Senyang, Baskin, Elizabeth, Patt, Andrew, Siddiqui, Jalal K, Mathé, Ewy A

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Noninvasive Urinary Metabolomic Profiling Identifies Diagnostic and Prognostic Markers in Lung Cancer von MATHE, Ewy A, PATTERSON, Andrew D, KAZANDJIAN, Dickran G, HATZAKIS, Emmanuel, GONZALEZ, Frank J, HARRIS, Curtis C, HAZNADAR, Majda, MANNA, Soumen K, KRAUSZ, Kristopher W, BOWMAN, Elise D, SHIELDS, Peter G, IDLE, Jeffrey R, SMITH, Philip B, ANAMI, Katsuhiro

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Exploring NCATS in-house biomedical data for evidence-based drug repurposing von Liu, Fang, Patt, Andrew, Chen, Chloe, Huang, Ruili, Xu, Yanji, Mathé, Ewy A, Zhu, Qian

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Integrative rare disease biomedical profile based network supporting drug repurposing or repositioning, a case study of glioblastoma von McGowan, Erin, Sanjak, Jaleal, Mathé, Ewy A, Zhu, Qian

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Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources von Eicher, Tara, Kinnebrew, Garrett, Patt, Andrew, Spencer, Kyle, Ying, Kevin, Ma, Qin, Machiraju, Raghu, Mathé, And Ewy A

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Preexisting Autoimmunity Is Associated With Increased Severity of Coronavirus Disease 2019: A Retrospective Cohort Study Using Data From the National COVID Cohort Collaborative (N3... von Yadaw, Arjun S, Sahner, David K, Sidky, Hythem, Afzali, Behdad, Hotaling, Nathan, Pfaff, Emily R, Mathé, Ewy A

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Recent advances in mass spectrometry-based computational metabolomics von Ebbels, Timothy M.D., van der Hooft, Justin J.J., Chatelaine, Haley, Broeckling, Corey, Zamboni, Nicola, Hassoun, Soha, Mathé, Ewy A.

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