The taxonomic name resolution service: an online tool for automated standardization of plant names von Boyle, Brad, Hopkins, Nicole, Lu, Zhenyuan, Raygoza Garay, Juan Antonio, Mozzherin, Dmitry, Rees, Tony, Matasci, Naim, Narro, Martha L, Piel, William H, McKay, Sheldon J, Lowry, Sonya, Freeland, Chris, Peet, Robert K, Enquist, Brian J

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Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP) von Carpenter, Eric J, Matasci, Naim, Ayyampalayam, Saravanaraj, Wu, Shuangxiu, Sun, Jing, Yu, Jun, Jimenez Vieira, Fabio Rocha, Bowler, Chris, Dorrell, Richard G, Gitzendanner, Matthew A, Li, Ling, Du, Wensi, K. Ullrich, Kristian, Wickett, Norman J, Barkmann, Todd J, Barker, Michael S, Leebens-Mack, James H, Wong, Gane Ka-Shu

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Imaging-Based Machine Learning Analysis of Patient-Derived Tumor Organoid Drug Response von Spiller, Erin R, Ung, Nolan, Kim, Seungil, Patsch, Katherin, Lau, Roy, Strelez, Carly, Doshi, Chirag, Choung, Sarah, Choi, Brandon, Juarez Rosales, Edwin Francisco, Lenz, Heinz-Josef, Matasci, Naim, Mumenthaler, Shannon M

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Adaptation of Imaging Mass Cytometry to Explore the Single Cell Alloimmune Landscape of Liver Transplant Rejection von Ung, Nolan, Goldbeck, Cameron, Man, Cassandra, Hoeflich, Julianne, Sun, Ren, Barbetta, Arianna, Matasci, Naim, Katz, Jonathan, Lee, Jerry S H, Chopra, Shefali, Asgharzadeh, Shahab, Warren, Mika, Sher, Linda, Kohli, Rohit, Akbari, Omid, Genyk, Yuri, Emamaullee, Juliet

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Monitoring dynamic cytotoxic chemotherapy response in castration-resistant prostate cancer using plasma cell-free DNA (cfDNA) von Patsch, Katherin, Matasci, Naim, Soundararajan, Anjana, Diaz, Patricia, Agus, David B, Ruderman, Daniel, Gross, Mitchell E

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A novel thin plate spline methodology to model tissue surfaces and quantify tumor cell invasion in organ-on-chip models von Elton, Elizabeth, Strelez, Carly, Ung, Nolan, Perez, Rachel, Ghaffarian, Kimya, Hixon, Danielle, Matasci, Naim, Mumenthaler, Shannon M.

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Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls von Miller, Allison J, Matasci, Naim, Schwaninger, Heidi, Aradhya, Mallikarjuna K, Prins, Bernard, Zhong, Gan-Yuan, Simon, Charles, Buckler, Edward S, Myles, Sean, Wang, Ting

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Immune biomarkers associated with COVID-19 disease severity in an urban, hospitalized population von Chambliss, Allison B., Aljehani, Mayada, Tran, Brian, Chen, Xingyao, Elton, Elizabeth, Garri, Carolina, Ung, Nolan, Matasci, Naim, Gross, Mitchell E.

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Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient von Stoltzfus, Arlin, Lapp, Hilmar, Matasci, Naim, Deus, Helena, Sidlauskas, Brian, Zmasek, Christian M, Vaidya, Gaurav, Pontelli, Enrico, Cranston, Karen, Vos, Rutger, Webb, Campbell O, Harmon, Luke J, Pirrung, Megan, O'Meara, Brian, Pennell, Matthew W, Mirarab, Siavash, Rosenberg, Michael S, Balhoff, James P, Bik, Holly M, Heath, Tracy A, Midford, Peter E, Brown, Joseph W, McTavish, Emily Jane, Sukumaran, Jeet, Westneat, Mark, Alfaro, Michael E, Steele, Aaron, Jordan, Greg

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One thousand plant transcriptomes and the phylogenomics of green plants von Leebens-Mack, James H, Barker, Michael S, Carpenter, Eric J, Deyholos, Michael K, Gitzendanner, Matthew A, Graham, Sean W, Grosse, Ivo

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Phylotranscriptomic analysis of the origin and early diversification of land plants von Wickett, Norman J, Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Carpenter, Eric, Matasci, Naim, Ayyampalayam, Saravanaraj, Barker, Michael S, Burleigh, J Gordon, Gitzendanner, Matthew A, Ruhfel, Brad R, Wafula, Eric, Der, Joshua P, Graham, Sean W, Mathews, Sarah, Melkonian, Michael, Soltis, Douglas E, Soltis, Pamela S, Miles, Nicholas W, Rothfels, Carl J, Pokorny, Lisa, Shaw, A Jonathan, DeGironimo, Lisa, Stevenson, Dennis W, Surek, Barbara, Villarreal, Juan Carlos, Roure, Béatrice, Philippe, Hervé, dePamphilis, Claude W, Chen, Tao, Deyholos, Michael K, Baucom, Regina S, Kutchan, Toni M, Augustin, Megan M, Wang, Jun, Zhang, Yong, Tian, Zhijian, Yan, Zhixiang, Wu, Xiaolei, Sun, Xiao, Wong, Gane Ka-Shu, Leebens-Mack, James

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Individualized treatment estimates to inform on personalized cancer care decisions for treatment selection and treatment management von Walsh, David, Srivatsa, Sumana, George, Renee, Ellis, Ben, Aljehani, Mayada, Gross, Mitchell E., Basho, Reva K., Matasci, Naim, Swisher, Christine

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Data access for the 1,000 Plants (1KP) project von Matasci, Naim, Hung, Ling-Hong, Yan, Zhixiang, Carpenter, Eric J, Wickett, Norman J, Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Ayyampalayam, Saravanaraj, Barker, Michael, Burleigh, J Gordon, Gitzendanner, Matthew A, Wafula, Eric, Der, Joshua P, dePamphilis, Claude W, Roure, Béatrice, Philippe, Hervé, Ruhfel, Brad R, Miles, Nicholas W, Graham, Sean W, Mathews, Sarah, Surek, Barbara, Melkonian, Michael, Soltis, Douglas E, Soltis, Pamela S, Rothfels, Carl, Pokorny, Lisa, Shaw, Jonathan A, DeGironimo, Lisa, Stevenson, Dennis W, Villarreal, Juan Carlos, Chen, Tao, Kutchan, Toni M, Rolf, Megan, Baucom, Regina S, Deyholos, Michael K, Samudrala, Ram, Tian, Zhijian, Wu, Xiaolei, Sun, Xiao, Zhang, Yong, Wang, Jun, Leebens-Mack, Jim, Wong, Gane Ka-Shu

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The iPlant Collaborative: Cyberinfrastructure for Plant Biology von Goff, Stephen A, Vaughn, Matthew, McKay, Sheldon, Lyons, Eric, Stapleton, Ann E, Gessler, Damian, Matasci, Naim, Wang, Liya, Hanlon, Matthew, Lenards, Andrew, Muir, Andy, Merchant, Nirav, Lowry, Sonya, Mock, Stephen, Helmke, Matthew, Kubach, Adam, Narro, Martha, Hopkins, Nicole, Micklos, David, Hilgert, Uwe, Gonzales, Michael, Jordan, Chris, Skidmore, Edwin, Dooley, Rion, Cazes, John, McLay, Robert, Lu, Zhenyuan, Pasternak, Shiran, Koesterke, Lars, Piel, William H, Grene, Ruth, Noutsos, Christos, Gendler, Karla, Feng, Xin, Tang, Chunlao, Lent, Monica, Kim, Seung-Jin, Kvilekval, Kristian, Manjunath, B S, Tannen, Val, Stamatakis, Alexandros, Sanderson, Michael, Welch, Stephen M, Cranston, Karen A, Soltis, Pamela, Soltis, Doug, O'Meara, Brian, Ane, Cecile, Brutnell, Tom, Kleibenstein, Daniel J, White, Jeffery W, Leebens-Mack, James, Donoghue, Michael J, Spalding, Edgar P, Vision, Todd J, Myers, Christopher R, Lowenthal, David, Enquist, Brian J, Boyle, Brad, Akoglu, Ali, Andrews, Greg, Ram, Sudha, Ware, Doreen, Stein, Lincoln, Stanzione, Dan

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Abstract A20: Use of cell-free plasma DNA for dynamic monitoring of response to cytotoxic chemotherapy von Ruderman, Daniel, Patsch, Katherin, Matasci, Naim, Soundararajan, Anjana, Diaz, Patricia, Gross, Mitchell E.

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Phylogenetic Analysis with the iPlant Discovery Environment von Matasci, Naim, McKay, Sheldon

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Abstract 3731: A novel multidimensional cfDNA assay for real time analysis of chemotherapy response von Shah, Pavan P., Patsch, Katherin, Matasci, Naim, Soudararajan, Anjana, Diaz, Patricia, Agus, David B., Ruderman, Daniel, Gross, Mitchell E.

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Data mining with iPlant: A meeting report from the 2013 GARNet workshop, Data mining with iPlant von Martin, Lisa, Cook, Charis, Matasci, Naim, Williams, Jason, Bastow, Ruth

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Abstract 3934: Bladder cancer tumor heterogeneity: development of a system-level mutation assay von Patsch, Katherin, Matasci, Naim, Soundararajan, Anjana, Nicoll, John, Katz, Jonathan, Sanchez, Antonio, Feierstein, Erika, Loy, Christina Van, Xu, Zhao, Agus, David B., Gross, Mitchell E., Ruderman, Daniel

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Abstract 2414: Interrogating cellular metabolism reveals mTORC2 as a new biomarker to stratify epidermal growth factor receptor-mutant non-small cell lung cancer von Chiang, Chun-Te, Ung, Nolan, Demetriou, Alexandra N., Chiu, Chi-Li, Choudhury, Niha, Arnesano, Cosimo, Fraser, Scott E., Agus, David B., Matasci, Naim, Ruderman, Dan L., Mumenthaler, Shannon M.

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