Bug Prediction Metrics Based Decision Support for Preventive Software Maintenance von Maskeri, G., Karnam, D., Viswanathan, S. A., Padmanabhuni, S.

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Version history based source code plagiarism detection in proprietary systems von Maskeri, G., Karnam, D., Viswanathan, S. A., Padmanabhuni, S.

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Somatic mutational landscape of AML with inv(16) or t(8;21) identifies patterns of clonal evolution in relapse leukemia von Sood, R, Hansen, N F, Donovan, F X, Carrington, B, Bucci, D, Maskeri, B, Young, A, Trivedi, N S, Kohlschmidt, J, Stone, R M, Caligiuri, M A, Chandrasekharappa, S C, Marcucci, G, Mullikin, J C, Bloomfield, C D, Liu, P

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The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine von Biesecker, Leslie G, Mullikin, James C, Facio, Flavia M, Turner, Clesson, Cherukuri, Praveen F, Blakesley, Robert W, Bouffard, Gerard G, Chines, Peter S, Cruz, Pedro, Hansen, Nancy F, Teer, Jamie K, Maskeri, Baishali, Young, Alice C, Manolio, Teri A, Wilson, Alexander F, Finkel, Toren, Hwang, Paul, Arai, Andrew, Remaley, Alan T, Sachdev, Vandana, Shamburek, Robert, Cannon, Richard O, Green, Eric D

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API-Based and Information-Theoretic Metrics for Measuring the Quality of Software Modularization von Santonu Sarkar, Girish Maskeri Rama, Kak, A.C.

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Using Exome Data to Identify Malignant Hyperthermia Susceptibility Mutations von GONSALVES, Stephen G, NG, David, JOHNSTON, Jennifer J, TEER, Jamie K, STENSON, Peter D, COOPER, David N, MULLIKIN, James C, BIESECKER, Leslie G

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Gene-based sequencing identifies lipid-influencing variants with ethnicity-specific effects in African Americans von Bentley, Amy R, Chen, Guanjie, Shriner, Daniel, Doumatey, Ayo P, Zhou, Jie, Huang, Hanxia, Mullikin, James C, Blakesley, Robert W, Hansen, Nancy F, Bouffard, Gerard G, Cherukuri, Praveen F, Maskeri, Baishali, Young, Alice C, Adeyemo, Adebowale, Rotimi, Charles N

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Evaluation of variant detection software for pooled next-generation sequence data von Huang, Howard W, Mullikin, James C, Hansen, Nancy F

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Comparative analyses of multi-species sequences from targeted genomic regions von Green, E. D, Thomas, J. W, Touchman, J. W, Blakesley, R. W, Bouffard, G. G, Beckstrom-Sternberg, S. M, Margulies, E. H, Blanchette, M, Siepel, A. C, Thomas, P. J, McDowell, J. C, Maskeri, B, Hansen, N. F, Schwartz, M. S, Weber, R. J, Kent, W. J, Karolchik, D, Bruen, T. C, Bevan, R, Cutler, D. J, Schwartz, S, Elnitski, L, Idol, J. R, Prasad, A. B, Lee-Lin, S.-Q, Maduro, V. V. B, Summers, T. J, Portnoy, M. E, Dietrich, N. L, Akhter, N, Ayele, K, Benjamin, B, Cariaga, K, Brinkley, C. P, Brooks, S. Y, Granite, S, Guan, X, Gupta, J, Haghighi, P, Ho, S.-L, Huang, M. C, Karlins, E, Laric, P. L, Legaspi, R, Lim, M. J, Maduro, Q. L, Masiello, C. A, Mastrian, S. D, McCloskey, J. C, Pearson, R, Stantripop, S, Tiongson, E. E, Tran, J. T, Tsurgeon, C, Vogt, J. L, Walker, M. A, Wetherby, K. D, Wiggins, L. S, Young, A. C, Zhang, L.-H, Osoegawa, K, Zhu, B, Zhao, B, Shu, C. L, De Jong, P. J, Lawrence, C. E, Smit, A. F, Chakravarti, A, Haussler, D, Green, P, Miller, W

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Three Draft Genome Sequences of Staphylococcus Species Isolated from the Urine of Healthy Bovine Heifers (Gyr Breed) von Giannattasio-Ferraz, Silvia, Maskeri, Laura, Oliveira, André P, Barbosa-Stancioli, Edel F, Putonti, Catherine

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Somatic mutational landscape of AML with inv identifies patterns of clonal evolution in relapse leukemia von Sood, R, Hansen, N.F, Donovan, F.X, Carrington, B, Bucci, D, Maskeri, B, Young, A, Trivedi, N.S, Kohlschmidt, J, Stone, R.M, Caligiuri, M.A, Chandrasekharappa, S.C, Marcucci, G, Mullikin, J.C, Bloomfield, C.D, Liu, P

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Transcription-associated mutational asymmetry in mammalian evolution von Green, Phil, Ewing, Brent, Miller, Webb, Thomas, Pamela J, Green, Eric D

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Metrics for Measuring the Quality of Modularization of Large-Scale Object-Oriented Software von Sarkar, S., Kak, A.C., Rama, G.M.

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Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements von Nikolaev, Sergey I, Montoya-Burgos, Juan I, Popadin, Konstantin, Parand, Leila, Margulies, Elliott H, Antonarakis, Stylianos E

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An intermediate grade of finished genomic sequence suitable for comparative analyses von Blakesley, Robert W, Hansen, Nancy F, Mullikin, James C, Thomas, Pamela J, McDowell, Jennifer C, Maskeri, Baishali, Young, Alice C, Benjamin, Beatrice, Brooks, Shelise Y, Coleman, Bradley I, Gupta, Jyoti, Ho, Shi-Ling, Karlins, Eric M, Maduro, Quino L, Stantripop, Sirintorn, Tsurgeon, Cyrus, Vogt, Jennifer L, Walker, Michelle A, Masiello, Catherine A, Guan, Xiaobin, Bouffard, Gerard G, Green, Eric D

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Early history of mammals is elucidated with the ENCODE multiple species sequencing data von Nikolaev, Sergey, Montoya-Burgos, Juan I, Margulies, Elliott H, Rougemont, Jacques, Nyffeler, Bruno, Antonarakis, Stylianos E

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Gene-Based Sequencing Identifies Lipid-Influencing Variants with Ethnicity-Specific Effects in African Americans: e1004190 von Bentley, Amy R, Chen, Guanjie, Shriner, Daniel, Doumatey, Ayo P, Zhou, Jie, Huang, Hanxia, Mullikin, James C, Blakesley, Robert W, Hansen, Nancy F, Bouffard, Gerard G, Cherukuri, Praveen F, Maskeri, Baishali, Young, Alice C, Adeyemo, Adebowale, Rotimi, Charles N

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Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates von Blakesley, Robert W, Hansen, Nancy F, Gupta, Jyoti, McDowell, Jennifer C, Maskeri, Baishali, Barnabas, Beatrice B, Brooks, Shelise Y, Coleman, Holly, Haghighi, Payam, Ho, Shi-Ling, Schandler, Karen, Stantripop, Sirintorn, Vogt, Jennifer L, Thomas, Pamela J, Bouffard, Gerard G, Green, Eric D

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Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome von Liu, Ge, Zhao, Shaying, Bailey, Jeffrey A, Sahinalp, S Cenk, Alkan, Can, Tuzun, Eray, Green, Eric D, Eichler, Evan E

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Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes von Margulies, Elliott H, Maduro, Valerie V B, Thomas, Pamela J, Tomkins, Jeffery P, Amemiya, Chris T, Luo, Meizhong, Green, Eric D

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