The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics app... von Poblete-Castro, Ignacio, Escapa, Isabel F, Jäger, Christian, Puchalka, Jacek, Lam, Carolyn Ming Chi, Schomburg, Dietmar, Prieto, María Auxiliadora, Martins dos Santos, Vítor A P

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Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis von dos Santos, Vítor AP Martins, Schneiker, Susanne, Bartels, Daniela, Bekel, Thomas, Brecht, Martina, Buhrmester, Jens, Chernikova, Tatyana N, Denaro, Renata, Ferrer, Manuel, Gertler, Christoph, Goesmann, Alexander, Golyshina, Olga V, Kaminski, Filip, Khachane, Amit N, Lang, Siegmund, Linke, Burkhard, McHardy, Alice C, Meyer, Folker, Nechitaylo, Taras, Pühler, Alfred, Regenhardt, Daniela, Rupp, Oliver, Sabirova, Julia S, Selbitschka, Werner, Yakimov, Michail M, Timmis, Kenneth N, Vorhölter, Frank-Jörg, Weidner, Stefan, Kaiser, Olaf, Golyshin, Peter N

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The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae von Gross, Roy, Guzman, Carlos A, Sebaihia, Mohammed, dos Santos, Vítor A P Martins, Pieper, Dietmar H, Koebnik, Ralf, Lechner, Melanie, Bartels, Daniela, Buhrmester, Jens, Choudhuri, Jomuna V, Ebensen, Thomas, Gaigalat, Lars, Herrmann, Stefanie, Khachane, Amit N, Larisch, Christof, Link, Stefanie, Linke, Burkhard, Meyer, Folker, Mormann, Sascha, Nakunst, Diana, Rückert, Christian, Schneiker-Bekel, Susanne, Schulze, Kai, Vorhölter, Frank-Jörg, Yevsa, Tetyana, Engle, Jacquelyn T, Goldman, William E, Pühler, Alfred, Göbel, Ulf B, Goesmann, Alexander, Blöcker, Helmut, Kaiser, Olaf, Martinez-Arias, Rosa

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Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition von van Duuren, Jozef B J H, Puchałka, Jacek, Mars, Astrid E, Bücker, René, Eggink, Gerrit, Wittmann, Christoph, Dos Santos, Vítor A P Martins

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Context matters: On the road to responsible biosafety technologies in synthetic biology von Kallergi, Amalia, Asin-Garcia, Enrique, Martins dos Santos, Vitor AP, Landeweerd, Laurens

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Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites von Bielecki, Piotr, Komor, Uliana, Bielecka, Agata, Müsken, Mathias, Puchałka, Jacek, Pletz, Mathias W., Ballmann, Manfred, Martins dos Santos, Vítor AP, Weiss, Siegfried, Häussler, Susanne

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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis von Belda, Eugeni, van Heck, Ruben G. A., José Lopez-Sanchez, Maria, Cruveiller, Stéphane, Barbe, Valérie, Fraser, Claire, Klenk, Hans-Peter, Petersen, Jörn, Morgat, Anne, Nikel, Pablo I., Vallenet, David, Rouy, Zoé, Sekowska, Agnieszka, Martins dos Santos, Vitor A. P., de Lorenzo, Víctor, Danchin, Antoine, Médigue, Claudine

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Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1 von Oberhardt, Matthew A, Puchalka, Jacek, Fryer, Kimberly E, Santos, Vitor A P Martins dos, Papin, Jason A

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Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction von Fang, Kechi, Zhao, Hansheng, Sun, Changyue, Lam, Carolyn M C, Chang, Suhua, Zhang, Kunlin, Panda, Gurudutta, Godinho, Miguel, Martins dos Santos, Vítor A P, Wang, Jing

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RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource von van Dam, Jesse Cj, Koehorst, Jasper J, Schaap, Peter J, Martins Dos Santos, Vitor Ap, Suarez-Diez, Maria

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Discriminatory plasma biomarkers predict specific clinical phenotypes of necrotizing soft-tissue infections von Medina, Laura M. Palma, Rath, Eivind, Jahagirdar, Sanjeevan, Bruun, Trond, Madsen, Martin B., Stralin, Kristoffer, Unge, Christian, Hansen, Marco Bo, Arnell, Per, Nekludov, Michael, Hyldegaard, Ole, Lourda, Magda, Santos, Vitor A. P. Martins dos, Saccenti, Edoardo, Skrede, Steinar, Svensson, Mattias, Norrby-Teglund, Anna

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Gut microbiota disturbance during antibiotic therapy: A multi-omic approach von Ferrer, Manuel, Martins dos Santos, Vitor AP, Ott, Stephan J, Moya, Andrés

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Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage von Méndez-García, Celia, Mesa, Victoria, Sprenger, Richard R, Richter, Michael, Diez, María Suárez, Solano, Jennifer, Bargiela, Rafael, Golyshina, Olga V, Manteca, Ángel, Ramos, Juan Luis, Gallego, José R, Llorente, Irene, Martins dos Santos, Vitor AP, Jensen, Ole N, Peláez, Ana I, Sánchez, Jesús, Ferrer, Manuel

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From Innovation to Application: Bridging the Valley of Death in Industrial Biotechnology von Kampers, Linde F.C., Asin-Garcia, Enrique, Schaap, Peter J., Wagemakers, Annemarie, Martins dos Santos, Vitor A.P.

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Context matters von Kallergi, Amalia, Asin‐Garcia, Enrique, Martins dos Santos, Vitor AP, Landeweerd, Laurens

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Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of P seudomonas aeruginosa to chronically infected host sites von Bielecki, Piotr, Komor, Uliana, Bielecka, Agata, Müsken, Mathias, Puchałka, Jacek, Pletz, Mathias W., Ballmann, Manfred, Martins dos Santos, Vítor AP, Weiss, Siegfried, Häussler, Susanne

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Protoanemonin: a natural quorum sensing inhibitor that selectively activates iron starvation response von Bobadilla Fazzini, Roberto A., Skindersoe, Mette E., Bielecki, Piotr, Puchałka, Jacek, Givskov, Michael, Martins dos Santos, Vitor A. P.

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Genetic Safeguards for Safety-by-design: So Close Yet So Far von Asin-Garcia, Enrique, Kallergi, Amalia, Landeweerd, Laurens, Martins dos Santos, Vitor A.P.

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Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine von Gerritsen, Jacoline, Hornung, Bastian, Renckens, Bernadette, Sacha AFT VanHijum, Vitor AP Martins dos Santos, Rijkers, Ger T, Schaap, Peter J, de Vos, Willem M, Smidt, Hauke

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Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis von van Dam, Jesse C J, Schaap, Peter J, Martins dos Santos, Vitor A P, Suárez-Diez, María

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