Normalizing and denoising protein expression data from droplet-based single cell profiling von Mulè, Matthew P., Martins, Andrew J., Tsang, John S.

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Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells von Zhong, Chao, Zheng, Mingzhu, Cui, Kairong, Martins, Andrew J., Hu, Gangqing, Li, Dan, Tessarollo, Lino, Kozlov, Serguei, Keller, Jonathan R., Tsang, John S., Zhao, Keji, Zhu, Jinfang

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Adaptive immune responses to SARS-CoV-2 persist in the pharyngeal lymphoid tissue of children von Xu, Qin, Milanez-Almeida, Pedro, Martins, Andrew J., Radtke, Andrea J., Hoehn, Kenneth B., Oguz, Cihan, Chen, Jinguo, Liu, Can, Tang, Juanjie, Grubbs, Gabrielle, Stein, Sydney, Ramelli, Sabrina, Kabat, Juraj, Behzadpour, Hengameh, Karkanitsa, Maria, Spathies, Jacquelyn, Kalish, Heather, Kardava, Lela, Kirby, Martha, Cheung, Foo, Preite, Silvia, Duncker, Patrick C., Kitakule, Moses M., Romero, Nahir, Preciado, Diego, Gitman, Lyuba, Koroleva, Galina, Smith, Grace, Shaffer, Arthur, McBain, Ian T., McGuire, Peter J., Pittaluga, Stefania, Germain, Ronald N., Apps, Richard, Schwartz, Daniella M., Sadtler, Kaitlyn, Moir, Susan, Chertow, Daniel S., Kleinstein, Steven H., Khurana, Surender, Tsang, John S., Mudd, Pamela, Schwartzberg, Pamela L., Manthiram, Kalpana

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Transcriptional Response of Respiratory Epithelium to Nontuberculous Mycobacteria von Matsuyama, Masashi, Martins, Andrew J, Shallom, Shamira, Kamenyeva, Olena, Kashyap, Anuj, Sampaio, Elizabeth P, Kabat, Juraj, Olivier, Kenneth N, Zelazny, Adrian M, Tsang, John S, Holland, Steven M

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Acute and persistent responses after H5N1 vaccination in humans von Apps, Richard, Biancotto, Angélique, Candia, Julián, Kotliarov, Yuri, Perl, Shira, Cheung, Foo, Farmer, Rohit, Mulè, Matthew P., Rachmaninoff, Nicholas, Chen, Jinguo, Martins, Andrew J., Shi, Rongye, Zhou, Huizhi, Bansal, Neha, Schum, Paula, Olnes, Matthew J., Milanez-Almeida, Pedro, Han, Kyu Lee, Sellers, Brian, Cortese, Mario, Hagan, Thomas, Rouphael, Nadine, Pulendran, Bali, King, Lisa, Manischewitz, Jody, Khurana, Surender, Golding, Hana, van der Most, Robbert G., Dickler, Howard B., Germain, Ronald N., Schwartzberg, Pamela L., Tsang, John S.

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Protective role of G-CSF in dextran sulfate sodium-induced acute colitis through generating gut-homing macrophages von Meshkibaf, Shahab, Martins, Andrew J., Henry, Garth T., Kim, Sung Ouk

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Resident Macrophages Cloak Tissue Microlesions to Prevent Neutrophil-Driven Inflammatory Damage von Uderhardt, Stefan, Martins, Andrew J., Tsang, John S., Lämmermann, Tim, Germain, Ronald N.

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Tracking B cell responses to the SARS-CoV-2 mRNA-1273 vaccine von Lopes de Assis, Felipe, Hoehn, Kenneth B., Zhang, Xiaozhen, Kardava, Lela, Smith, Connor D., El Merhebi, Omar, Buckner, Clarisa M., Trihemasava, Krittin, Wang, Wei, Seamon, Catherine A., Chen, Vicky, Schaughency, Paul, Cheung, Foo, Martins, Andrew J., Chiang, Chi-I, Li, Yuxing, Tsang, John S., Chun, Tae-Wook, Kleinstein, Steven H., Moir, Susan

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Robust Inference of Cell-to-Cell Expression Variations from Single- and K-Cell Profiling von Narayanan, Manikandan, Martins, Andrew J, Tsang, John S

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Human transcriptional signature of protection after Plasmodium falciparum immunization and infectious challenge via mosquito bites von Mura, Marie, Misganaw, Burook, Gautam, Aarti, Robinson, Tanisha, Chaudhury, Sidhartha, Bansal, Neha, Martins, Andrew J., Tsang, John, Hammamieh, Rasha, Bergmann-Leitner, Elke

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Distinct NF-κB and MAPK Activation Thresholds Uncouple Steady-State Microbe Sensing from Anti-pathogen Inflammatory Responses von Gottschalk, Rachel A., Martins, Andrew J., Angermann, Bastian R., Dutta, Bhaskar, Ng, Caleb E., Uderhardt, Stefan, Tsang, John S., Fraser, Iain D.C., Meier-Schellersheim, Martin, Germain, Ronald N.

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Innate and adaptive lymphocytes sequentially shape the gut microbiota and lipid metabolism von Mao, Kairui, Baptista, Antonio P., Tamoutounour, Samira, Zhuang, Lenan, Bouladoux, Nicolas, Martins, Andrew J., Huang, Yuefeng, Gerner, Michael Y., Belkaid, Yasmine, Germain, Ronald N.

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IFN-mediated negative feedback supports bacteria class-specific macrophage inflammatory responses von Gottschalk, Rachel A, Dorrington, Michael G, Dutta, Bhaskar, Krauss, Kathleen S, Martins, Andrew J, Uderhardt, Stefan, Chan, Waipan, Tsang, John S, Torabi-Parizi, Parizad, Fraser, Iain Dc, Germain, Ronald N

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Intravenous nanoparticle vaccination generates stem-like TCF1+ neoantigen-specific CD8+ T cells von Baharom, Faezzah, Ramirez-Valdez, Ramiro A., Tobin, Kennedy K. S., Yamane, Hidehiro, Dutertre, Charles-Antoine, Khalilnezhad, Ahad, Reynoso, Glennys V., Coble, Vincent L., Lynn, Geoffrey M., Mulè, Matthew P., Martins, Andrew J., Finnigan, John P., Zhang, Xiao Meng, Hamerman, Jessica A., Bhardwaj, Nina, Tsang, John S., Hickman, Heather D., Ginhoux, Florent, Ishizuka, Andrew S., Seder, Robert A.

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Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus von Kotliarov, Yuri, Sparks, Rachel, Martins, Andrew J., Mulè, Matthew P., Lu, Yong, Goswami, Meghali, Kardava, Lela, Banchereau, Romain, Pascual, Virginia, Biancotto, Angélique, Chen, Jinguo, Schwartzberg, Pamela L., Bansal, Neha, Liu, Candace C., Cheung, Foo, Moir, Susan, Tsang, John S.

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Handbook of Educational Psychology and Students with Special Needs von Martin, Andrew J., Sperling, Rayne A., Newton, Kristie J.

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Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19 von Liu, Can, Martins, Andrew J., Lau, William W., Rachmaninoff, Nicholas, Chen, Jinguo, Imberti, Luisa, Mostaghimi, Darius, Fink, Danielle L., Burbelo, Peter D., Dobbs, Kerry, Delmonte, Ottavia M., Bansal, Neha, Failla, Laura, Sottini, Alessandra, Quiros-Roldan, Eugenia, Han, Kyu Lee, Sellers, Brian A., Cheung, Foo, Sparks, Rachel, Chun, Tae-Wook, Moir, Susan, Lionakis, Michail S., Abers, Michael S., Apps, Richard, Bosticardo, Marita, Milanez-Almeida, Pedro, Mulè, Matthew P., Shaw, Elana, Zhang, Yu, Castelli, Francesco, Muiesan, Maria Lorenza, Tomasoni, Gabriele, Scolari, Francesco, Tucci, Alessandra, Rossi, Camillo, Su, Helen C., Kuhns, Douglas B., Cohen, Jeffrey I., Notarangelo, Luigi D., Tsang, John S.

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Cancer prognosis with shallow tumor RNA sequencing von Milanez-Almeida, Pedro, Martins, Andrew J., Germain, Ronald N., Tsang, John S.

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The anti-inflammatory role of granulocyte colony-stimulating factor in macrophage–dendritic cell crosstalk after Lactobacillus rhamnosus GR-1 exposure von Martins, Andrew J., Spanton, Sarah, Sheikh, Haroon I., Kim, Sung Ouk

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Influenza vaccination reveals sex dimorphic imprints of prior mild COVID-19 von Sparks, Rachel, Lau, William W., Liu, Can, Han, Kyu Lee, Vrindten, Kiera L., Sun, Guangping, Cox, Milann, Andrews, Sarah F., Bansal, Neha, Failla, Laura E., Manischewitz, Jody, Grubbs, Gabrielle, King, Lisa R., Koroleva, Galina, Leimenstoll, Stephanie, Snow, LaQuita, Chen, Jinguo, Tang, Juanjie, Mukherjee, Amrita, Sellers, Brian A., Apps, Richard, McDermott, Adrian B., Martins, Andrew J., Bloch, Evan M., Golding, Hana, Khurana, Surender, Tsang, John S.

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