Highly accurate differentiation of bone marrow cell morphologies using deep neural networks on a large image data set von Matek, Christian, Krappe, Sebastian, Münzenmayer, Christian, Haferlach, Torsten, Marr, Carsten

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destiny: diffusion maps for large-scale single-cell data in R von Angerer, Philipp, Haghverdi, Laleh, Büttner, Maren, Theis, Fabian J, Marr, Carsten, Buettner, Florian

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A BaSiC tool for background and shading correction of optical microscopy images von Peng, Tingying, Thorn, Kurt, Schroeder, Timm, Wang, Lichao, Theis, Fabian J., Marr, Carsten, Navab, Nassir

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Prospective identification of hematopoietic lineage choice by deep learning von Buggenthin, Felix, Buettner, Florian, Hoppe, Philipp S, Endele, Max, Kroiss, Manuel, Strasser, Michael, Schwarzfischer, Michael, Loeffler, Dirk, Kokkaliaris, Konstantinos D, Hilsenbeck, Oliver, Schroeder, Timm, Theis, Fabian J, Marr, Carsten

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Altered expression response upon repeated gene repression in single yeast cells von Schuh, Lea, Kukhtevich, Igor, Bheda, Poonam, Schulz, Melanie, Bordukova, Maria, Schneider, Robert, Marr, Carsten

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Correction: Reoccuring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatio-temporal patterns von Lupperger, Valerio, Marr, Carsten, Chapouton, Prisca

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Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network von Krumsiek, Jan, Marr, Carsten, Schroeder, Timm, Theis, Fabian J

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Injury triggers fascia fibroblast collective cell migration to drive scar formation through N-cadherin von Jiang, Dongsheng, Christ, Simon, Correa-Gallegos, Donovan, Ramesh, Pushkar, Kalgudde Gopal, Shruthi, Wannemacher, Juliane, Mayr, Christoph H., Lupperger, Valerio, Yu, Qing, Ye, Haifeng, Mück-Häusl, Martin, Rajendran, Vijayanand, Wan, Li, Liu, Juan, Mirastschijski, Ursula, Volz, Thomas, Marr, Carsten, Schiller, Herbert B., Rinkevich, Yuval

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InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification von Waibel, Dominik Jens Elias, Boushehri, Sayedali Shetab, Marr, Carsten

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Network plasticity of pluripotency transcription factors in embryonic stem cells von Filipczyk, Adam, Marr, Carsten, Hastreiter, Simon, Feigelman, Justin, Schwarzfischer, Michael, Hoppe, Philipp S., Loeffler, Dirk, Kokkaliaris, Konstantinos D., Endele, Max, Schauberger, Bernhard, Hilsenbeck, Oliver, Skylaki, Stavroula, Hasenauer, Jan, Anastassiadis, Konstantinos, Theis, Fabian J., Schroeder, Timm

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Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots von Marr, Carsten, Zhou, Joseph X, Huang, Sui

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Software tools for single-cell tracking and quantification of cellular and molecular properties von Hilsenbeck, Oliver, Schwarzfischer, Michael, Skylaki, Stavroula, Schauberger, Bernhard, Hoppe, Philipp S, Loeffler, Dirk, Kokkaliaris, Konstantinos D, Hastreiter, Simon, Skylaki, Eleni, Filipczyk, Adam, Strasser, Michael, Buggenthin, Felix, Feigelman, Justin S, Krumsiek, Jan, van den Berg, Adrianus J J, Endele, Max, Etzrodt, Martin, Marr, Carsten, Theis, Fabian J, Schroeder, Timm

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An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy von Buggenthin, Felix, Marr, Carsten, Schwarzfischer, Michael, Hoppe, Philipp S, Hilsenbeck, Oliver, Schroeder, Timm, Theis, Fabian J

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Domain Model Explains Propagation Dynamics and Stability of Histone H3K27 and H3K36 Methylation Landscapes von Alabert, Constance, Loos, Carolin, Voelker-Albert, Moritz, Graziano, Simona, Forné, Ignasi, Reveron-Gomez, Nazaret, Schuh, Lea, Hasenauer, Jan, Marr, Carsten, Imhof, Axel, Groth, Anja

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Reoccurring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatiotemporal patterns von Lupperger, Valerio, Marr, Carsten, Chapouton, Prisca

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RedTell: an AI tool for interpretable analysis of red blood cell morphology von Sadafi, Ario, Bordukova, Maria, Makhro, Asya, Navab, Nassir, Bogdanova, Anna, Marr, Carsten

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Cellular connectomes as arbiters of local circuit models in the cerebral cortex von Klinger, Emmanuel, Motta, Alessandro, Marr, Carsten, Theis, Fabian J., Helmstaedter, Moritz

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Social transfer of pathogenic fungus promotes active immunisation in ant colonies von Konrad, Matthias, Vyleta, Meghan L, Theis, Fabian J, Stock, Miriam, Tragust, Simon, Klatt, Martina, Drescher, Verena, Marr, Carsten, Ugelvig, Line V, Cremer, Sylvia

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Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies von Shetab Boushehri, Sayedali, Essig, Katharina, Chlis, Nikolaos-Kosmas, Herter, Sylvia, Bacac, Marina, Theis, Fabian J., Glasmacher, Elke, Marr, Carsten, Schmich, Fabian

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Increasing Neural Stem Cell Division Asymmetry and Quiescence Are Predicted to Contribute to the Age-Related Decline in Neurogenesis von Bast, Lisa, Calzolari, Filippo, Strasser, Michael K., Hasenauer, Jan, Theis, Fabian J., Ninkovic, Jovica, Marr, Carsten

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