DeepEMhancer: a deep learning solution for cryo-EM volume post-processing von Sanchez-Garcia, Ruben, Gomez-Blanco, Josue, Cuervo, Ana, Carazo, Jose Maria, Sorzano, Carlos Oscar S., Vargas, Javier

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MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps von Vilas, Jose Luis, Gómez-Blanco, Josué, Conesa, Pablo, Melero, Roberto, Miguel de la Rosa-Trevín, José, Otón, Joaquin, Cuenca, Jesús, Marabini, Roberto, Carazo, José María, Vargas, Javier, Sorzano, Carlos Oscar S.

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Automatic local resolution-based sharpening of cryo-EM maps von Ramírez-Aportela, Erney, Vilas, Jose Luis, Glukhova, Alisa, Melero, Roberto, Conesa, Pablo, Martínez, Marta, Maluenda, David, Mota, Javier, Jiménez, Amaya, Vargas, Javier, Marabini, Roberto, Sexton, Patrick M, Carazo, Jose Maria, Sorzano, Carlos Oscar S

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FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation von Ramírez-Aportela, Erney, Maluenda, David, Fonseca, Yunior C., Conesa, Pablo, Marabini, Roberto, Heymann, J. Bernard, Carazo, Jose Maria, Sorzano, Carlos Oscar S.

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Measuring local-directional resolution and local anisotropy in cryo-EM maps von Vilas, Jose Luis, Tagare, Hemant D., Vargas, Javier, Carazo, Jose Maria, Sorzano, Carlos Oscar S.

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GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information von Nogales-Cadenas, Ruben, Carmona-Saez, Pedro, Vazquez, Miguel, Vicente, Cesar, Yang, Xiaoyuan, Tirado, Francisco, Carazo, Jose María, Pascual-Montano, Alberto

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Self-assembly and regulation of protein cages from pre-organised coiled-coil modules von Lapenta, Fabio, Aupič, Jana, Vezzoli, Marco, Strmšek, Žiga, Da Vela, Stefano, Svergun, Dmitri I., Carazo, José María, Melero, Roberto, Jerala, Roman

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DeepRes : a new deep-learning- and aspect-based local resolution method for electron-microscopy maps von Ramírez-Aportela, Erney, Mota, Javier, Conesa, Pablo, Carazo, Jose Maria, Sorzano, Carlos Oscar S

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Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization von Scheres, Sjors H W, Gao, Haixiao, Valle, Mikel, Herman, Gabor T, Eggermont, Paul P B, Frank, Joachim, Carazo, Jose-Maria

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The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation von Ginex, Tiziana, Marco-Marín, Clara, Wieczór, Miłosz, Mata, Carlos P, Krieger, James, Ruiz-Rodriguez, Paula, López-Redondo, Maria Luisa, Francés-Gómez, Clara, Melero, Roberto, Sánchez-Sorzano, Carlos Óscar, Martínez, Marta, Gougeard, Nadine, Forcada-Nadal, Alicia, Zamora-Caballero, Sara, Gozalbo-Rovira, Roberto, Sanz-Frasquet, Carla, Arranz, Rocío, Bravo, Jeronimo, Rubio, Vicente, Marina, Alberto, Geller, Ron, Comas, Iñaki, Gil, Carmen, Coscolla, Mireia, Orozco, Modesto, Llácer, José Luis, Carazo, Jose-Maria

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Deep Consensus , a deep learning-based approach for particle pruning in cryo-electron microscopy von Sanchez-Garcia, Ruben, Segura, Joan, Maluenda, David, Carazo, Jose Maria, Sorzano, Carlos Oscar S

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Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap von Albanese, Pascal, Melero, Roberto, Engel, Benjamin D, Grinzato, Alessandro, Berto, Paola, Manfredi, Marcello, Chiodoni, Angelica, Vargas, Javier, Sorzano, Carlos Óscar Sánchez, Marengo, Emilio, Saracco, Guido, Zanotti, Giuseppe, Carazo, Jose-Maria, Pagliano, Cristina

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3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling von Segura, Joan, Sanchez-Garcia, Ruben, Tabas-Madrid, Daniel, Cuenca-Alba, Jesus, Sorzano, Carlos Oscar S., Carazo, Jose Maria

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Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures von Melero, Roberto, Sorzano, Carlos Oscar S, Foster, Brent, Vilas, José-Luis, Martínez, Marta, Marabini, Roberto, Ramírez-Aportela, Erney, Sanchez-Garcia, Ruben, Herreros, David, Del Caño, Laura, Losana, Patricia, Fonseca-Reyna, Yunior C, Conesa, Pablo, Wrapp, Daniel, Chacon, Pablo, McLellan, Jason S, Tagare, Hemant D, Carazo, Jose-Maria

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An Introduction to Maximum-Likelihood Methods in Cryo-EM von Sigworth, Fred J., Doerschuk, Peter C., Carazo, Jose-Maria, Scheres, Sjors H.W.

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3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures von Sanchez-Garcia, Ruben, Sorzano, Carlos Oscar Sanchez, Carazo, Jose Maria, Segura, Joan

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Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA von Melero, Roberto, Rajagopalan, Sridharan, Lázaro, Melisa, Joerger, Andreas C., Brandt, Tobias, Veprintsev, Dmitry B., Lasso, Gorka, Gil, David, Scheres, Sjors H. W., Carazo, José María, Fersht, Alan R., Valle, Mikel

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Insights into the molecular architecture of the 26S proteasome von Nickell, Stephan, Beck, Florian, Scheres, Sjors H.W, Korinek, Andreas, Förster, Friedrich, Lasker, Keren, Mihalache, Oana, Sun, Na, Nagy, István, Sali, Andrej, Plitzko, Jürgen M, Carazo, Jose-Maria, Mann, Matthias, Baumeister, Wolfgang

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Principal component analysis is limited to low‐resolution analysis in cryoEM von Sorzano, Carlos Oscar S., Carazo, Jose Maria

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The Molecular Control of Calcitonin Receptor Signaling von dal Maso, Emma, Glukhova, Alisa, Zhu, Yue, Garcia-Nafria, Javier, Tate, Christopher G, Atanasio, Silvia, Reynolds, Christopher A, Ramírez-Aportela, Erney, Carazo, Jose-Maria, Hick, Caroline A, Furness, Sebastian G. B, Hay, Debbie L, Liang, Yi-Lynn, Miller, Laurence J, Christopoulos, Arthur, Wang, Ming-Wei, Wootten, Denise, Sexton, Patrick M

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