Joint profiling of histone modifications and transcriptome in single cells from mouse brain von Zhu, Chenxu, Zhang, Yanxiao, Li, Yang Eric, Lucero, Jacinta, Behrens, M. Margarita, Ren, Bing

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Abnormal Gamma Oscillations in N -Methyl-D-Aspartate Receptor Hypofunction Models of Schizophrenia von Jadi, Monika P, Margarita Behrens, M, Sejnowski, Terrence J

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Global Epigenomic Reconfiguration During Mammalian Brain Development von Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.

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An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome von Zhu, Chenxu, Yu, Miao, Huang, Hui, Juric, Ivan, Abnousi, Armen, Hu, Rong, Lucero, Jacinta, Behrens, M. Margarita, Hu, Ming, Ren, Bing

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Comprehensive analysis of single cell ATAC-seq data with SnapATAC von Fang, Rongxin, Preissl, Sebastian, Li, Yang, Hou, Xiaomeng, Lucero, Jacinta, Wang, Xinxin, Motamedi, Amir, Shiau, Andrew K., Zhou, Xinzhu, Xie, Fangming, Mukamel, Eran A., Zhang, Kai, Zhang, Yanxiao, Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing

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Downregulation of parvalbumin at cortical GABA synapses reduces network gamma oscillatory activity von Volman, Vladislav, Behrens, M Margarita, Sejnowski, Terrence J

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Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex von Luo, Chongyuan, Keown, Christopher L., Kurihara, Laurie, Zhou, Jingtian, He, Yupeng, Li, Junhao, Castanon, Rosa, Lucero, Jacinta, Nery, Joseph R., Sandoval, Justin P., Bui, Brian, Sejnowski, Terrence J., Harkins, Timothy T., Mukamel, Eran A., Behrens, M. Margarita, Ecker, Joseph R.

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Ketamine-Induced Loss of Phenotype of Fast-Spiking Interneurons Is Mediated by NADPH-Oxidase von Behrens, M. Margarita, Ali, Sameh S, Dao, Diep N, Lucero, Jacinta, Shekhtman, Grigoriy, Quick, Kevin L, Dugan, Laura L

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Robust single-cell DNA methylome profiling with snmC-seq2 von Luo, Chongyuan, Rivkin, Angeline, Zhou, Jingtian, Sandoval, Justin P., Kurihara, Laurie, Lucero, Jacinta, Castanon, Rosa, Nery, Joseph R., Pinto-Duarte, António, Bui, Brian, Fitzpatrick, Conor, O’Connor, Carolyn, Ruga, Seth, Van Eden, Marc E., Davis, David A., Mash, Deborah C., Behrens, M. Margarita, Ecker, Joseph R.

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Does schizophrenia arise from oxidative dysregulation of parvalbumin-interneurons in the developing cortex? von Behrens, M. Margarita, Sejnowski, Terrence J.

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Interleukin-6 Mediates the Increase in NADPH-Oxidase in the Ketamine Model of Schizophrenia von Behrens, M. Margarita, Ali, Sameh S, Dugan, Laura L

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Iterative single-cell multi-omic integration using online learning von Gao, Chao, Liu, Jialin, Kriebel, April R., Preissl, Sebastian, Luo, Chongyuan, Castanon, Rosa, Sandoval, Justin, Rivkin, Angeline, Nery, Joseph R., Behrens, Margarita M., Ecker, Joseph R., Ren, Bing, Welch, Joshua D.

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Single-cell DNA methylation and 3D genome architecture in the human brain von Tian, Wei, Zhou, Jingtian, Bartlett, Anna, Zeng, Qiurui, Liu, Hanqing, Castanon, Rosa G, Kenworthy, Mia, Altshul, Jordan, Valadon, Cynthia, Aldridge, Andrew, Nery, Joseph R, Chen, Huaming, Xu, Jiaying, Johnson, Nicholas D, Lucero, Jacinta, Osteen, Julia K, Emerson, Nora, Rink, Jon, Lee, Jasper, Li, Yang E, Siletti, Kimberly, Liem, Michelle, Claffey, Naomi, O'Connor, Carolyn, Yanny, Anna Marie, Nyhus, Julie, Dee, Nick, Casper, Tamara, Shapovalova, Nadiya, Hirschstein, Daniel, Ding, Song-Lin, Hodge, Rebecca, Levi, Boaz P, Keene, C Dirk, Linnarsson, Sten, Lein, Ed, Ren, Bing, Behrens, M Margarita, Ecker, Joseph R

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Maternal immune activation impairs cognitive flexibility and alters transcription in frontal cortex von Amodeo, Dionisio A., Lai, Chi-Yu, Hassan, Omron, Mukamel, Eran A., Behrens, M. Margarita, Powell, Susan B.

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IL-6 mediated degeneration of forebrain GABAergic interneurons and cognitive impairment in aged mice through activation of neuronal NADPH oxidase von Dugan, Laura L, Ali, Sameh S, Shekhtman, Grigoriy, Roberts, Amanda J, Lucero, Jacinta, Quick, Kevin L, Behrens, M Margarita

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Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome von Lavery, Laura A, Ure, Kerstin, Wan, Ying-Wooi, Luo, Chongyuan, Trostle, Alexander J, Wang, Wei, Jin, Haijing, Lopez, Joanna, Lucero, Jacinta, Durham, Mark A, Castanon, Rosa, Nery, Joseph R, Liu, Zhandong, Goodell, Margaret, Ecker, Joseph R, Behrens, M Margarita, Zoghbi, Huda Y

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Repeated phencyclidine administration alters glutamate release and decreases GABA markers in the prefrontal cortex of rats von Amitai, Nurith, Kuczenski, Ronald, Behrens, M. Margarita, Markou, Athina

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Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3 von Li, Junhao, Pinto-Duarte, Antonio, Zander, Mark, Cuoco, Michael S, Lai, Chi-Yu, Osteen, Julia, Fang, Linjing, Luo, Chongyuan, Lucero, Jacinta D, Gomez-Castanon, Rosa, Nery, Joseph R, Silva-Garcia, Isai, Pang, Yan, Sejnowski, Terrence J, Powell, Susan B, Ecker, Joseph R, Mukamel, Eran A, Behrens, M Margarita

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A Specific Role for NR2A-Containing NMDA Receptors in the Maintenance of Parvalbumin and GAD67 Immunoreactivity in Cultured Interneurons von Kinney, Jefferson W, Davis, Christopher N, Tabarean, Iustin, Conti, Bruno, Bartfai, Tamas, Behrens, M. Margarita

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Brain-wide correspondence of neuronal epigenomics and distant projections von Zhou, Jingtian, Zhang, Zhuzhu, Wu, May, Liu, Hanqing, Pang, Yan, Bartlett, Anna, Peng, Zihao, Ding, Wubin, Rivkin, Angeline, Lagos, Will N., Williams, Elora, Lee, Cheng-Ta, Miyazaki, Paula Assakura, Aldridge, Andrew, Zeng, Qiurui, Salinda, J. L. Angelo, Claffey, Naomi, Liem, Michelle, Fitzpatrick, Conor, Boggeman, Lara, Yao, Zizhen, Smith, Kimberly A., Tasic, Bosiljka, Altshul, Jordan, Kenworthy, Mia A., Valadon, Cynthia, Nery, Joseph R., Castanon, Rosa G., Patne, Neelakshi S., Vu, Minh, Rashid, Mohammad, Jacobs, Matthew, Ito, Tony, Osteen, Julia, Emerson, Nora, Lee, Jasper, Cho, Silvia, Rink, Jon, Huang, Hsiang-Hsuan, Pinto-Duartec, António, Dominguez, Bertha, Smith, Jared B., O’Connor, Carolyn, Zeng, Hongkui, Chen, Shengbo, Lee, Kuo-Fen, Mukamel, Eran A., Jin, Xin, Margarita Behrens, M., Ecker, Joseph R., Callaway, Edward M.

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