OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities von Zomorrodi, Ali R, Maranas, Costas D

Volltext

A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains von Khodayari, Ali, Maranas, Costas D.

Volltext

From directed evolution to computational enzyme engineering—A review von Chowdhury, Ratul, Maranas, Costas D.

Volltext

SteadyCom: Predicting microbial abundances while ensuring community stability von Chan, Siu Hung Joshua, Simons, Margaret N, Maranas, Costas D

Volltext

OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions von Ranganathan, Sridhar, Suthers, Patrick F, Maranas, Costas D

Volltext

k-OptForce: integrating kinetics with flux balance analysis for strain design von Chowdhury, Anupam, Zomorrodi, Ali R, Maranas, Costas D

Volltext

GrowMatch: an automated method for reconciling in silico/in vivo growth predictions von Kumar, Vinay Satish, Maranas, Costas D

Volltext

SNPeffect: identifying functional roles of SNPs using metabolic networks von Sarkar, Debolina, Maranas, Costas D.

Volltext

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases von Kumar, Akhil, Suthers, Patrick F, Maranas, Costas D

Volltext

OptMAVEn--a new framework for the de novo design of antibody variable region models targeting specific antigen epitopes von Li, Tong, Pantazes, Robert J, Maranas, Costas D

Volltext

Optimization based automated curation of metabolic reconstructions von Satish Kumar, Vinay, Dasika, Madhukar S, Maranas, Costas D

Volltext

Recent advances in the reconstruction of metabolic models and integration of omics data von Saha, Rajib, Chowdhury, Anupam, Maranas, Costas D

Volltext

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design von Wang, Lin, Upadhyay, Vikas, Maranas, Costas D.

Volltext

Pathway design using de novo steps through uncharted biochemical spaces von Kumar, Akhil, Wang, Lin, Ng, Chiam Yu, Maranas, Costas D.

Volltext

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer von Kuchipudi, Suresh V, Surendran-Nair, Meera, Ruden, Rachel M, Yon, Michele, Nissly, Ruth H, Vandegrift, Kurt J, Nelli, Rahul K, Li, Lingling, Jayarao, Bhushan M, Maranas, Costas D, Levine, Nicole, Willgert, Katriina, Conlan, Andrew J K, Olsen, Randall J, Davis, James J, Musser, James M, Hudson, Peter J, Kapur, Vivek

Volltext

13C metabolic flux analysis at a genome-scale von Gopalakrishnan, Saratram, Maranas, Costas D.

Volltext

Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration von Ng, Chiam Yu, Farasat, Iman, Maranas, Costas D., Salis, Howard M.

Volltext

Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973 von Ungerer, Justin, Wendt, Kristen E., Hendry, John I., Maranas, Costas D., Pakrasi, Himadri B.

Volltext

Synthetic biology of cyanobacteria: unique challenges and opportunities von Berla, Bertram M, Saha, Rajib, Immethun, Cheryl M, Maranas, Costas D, Moon, Tae Seok, Pakrasi, Himadri B

Volltext

Artificial water channels enable fast and selective water permeation through water-wire networks von Song, Woochul, Joshi, Himanshu, Chowdhury, Ratul, Najem, Joseph S., Shen, Yue-xiao, Lang, Chao, Henderson, Codey B., Tu, Yu-Ming, Farell, Megan, Pitz, Megan E., Maranas, Costas D., Cremer, Paul S., Hickey, Robert J., Sarles, Stephen A., Hou, Jun-li, Aksimentiev, Aleksei, Kumar, Manish

Volltext