Recentrifuge: Robust comparative analysis and contamination removal for metagenomics von Martí, Jose Manuel

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Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies von Avila-Herrera, Aram, Kimbrel, Jeffrey A, Manuel Martí, Jose, Thissen, James, Saada, Edwin A, Weisenberger, Tracy, Arrildt, Kathryn T, Segelke, Brent W, Allen, Jonathan E, Zemla, Adam, Borucki, Monica K

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Metatranscriptomic dynamics after Verticillium dahliae infection and root damage in Olea europaea von Martí, Jose Manuel, Arias-Giraldo, Luis F, Díaz-Villanueva, Wladimiro, Arnau, Vicente, Rodríguez-Franco, Antonio, Garay, Carlos P

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Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples von Kimbrel, Jeffrey, Moon, Joseph, Avila-Herrera, Aram, Martí, Jose Manuel, Thissen, James, Mulakken, Nisha, Sandholtz, Sarah H, Ferrell, Tyshawn, Daum, Chris, Hall, Sara, Segelke, Brent, Arrildt, Kathryn T, Messenger, Sharon, Wadford, Debra A, Jaing, Crystal, Allen, Jonathan E, Borucki, Monica K

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Time Series Analysis of the Microbiota of Children Suffering From Acute Infectious Diarrhea and Their Recovery After Treatment von Dinleyici, Ener C, Martínez-Martínez, Daniel, Kara, Ates, Karbuz, Adem, Dalgic, Nazan, Metin, Ozge, Yazar, Ahmet S, Guven, Sirin, Kurugol, Zafer, Turel, Ozden, Kucukkoc, Mehmet, Yasa, Olcay, Eren, Makbule, Ozen, Metehan, Martí, Jose Manuel, P Garay, Carlos, Vandenplas, Yvan, Moya, Andrés

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Health and Disease Imprinted in the Time Variability of the Human Microbiome von Martí, Jose Manuel, Martínez-Martínez, Daniel, Rubio, Teresa, Gracia, César, Peña, Manuel, Latorre, Amparo, Moya, Andrés, P Garay, Carlos

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Correction: Recentrifuge: Robust comparative analysis and contamination removal for metagenomics von Martí, Jose Manuel

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Machine learning for metabolic engineering: A review von Lawson, Christopher E., Martí, Jose Manuel, Radivojevic, Tijana, Jonnalagadda, Sai Vamshi R., Gentz, Reinhard, Hillson, Nathan J., Peisert, Sean, Kim, Joonhoon, Simmons, Blake A., Petzold, Christopher J., Singer, Steven W., Mukhopadhyay, Aindrila, Tanjore, Deepti, Dunn, Joshua G., Garcia Martin, Hector

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Oxidative stress in the oral cavity is driven by individual-specific bacterial communities von Džunková, Mária, Martinez-Martinez, Daniel, Gardlík, Roman, Behuliak, Michal, Janšáková, Katarína, Jiménez, Nuria, Vázquez-Castellanos, Jorge F., Martí, Jose Manuel, D’Auria, Giuseppe, Bandara, H. M. H. N., Latorre, Amparo, Celec, Peter, Moya, Andrés

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Robust Analysis of Time Series in Virome Metagenomics von Martí, Jose Manuel

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GENTANGLE: integrated computational design of gene entanglements von Martí, Jose Manuel, Hsu, Chloe, Rochereau, Charlotte, Xu, Chenling, Blazejewski, Tomasz, Nisonoff, Hunter, Leonard, Sean P, Kang-Yun, Christina S, Chlebek, Jennifer, Ricci, Dante P, Park, Dan, Wang, Harris, Listgarten, Jennifer, Jiao, Yongqin, Allen, Jonathan E

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Unveiling Bacterial Interactions through Multidimensional Scaling and Dynamics Modeling von Dorado-Morales, Pedro, Vilanova, Cristina, P. Garay, Carlos, Martí, Jose Manuel, Porcar, Manuel

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ROS and NO Phytomelatonin-Induced Signaling Mechanisms under Metal Toxicity in Plants: A Review von Pardo-Hernández, Miriam, López-Delacalle, María, Martí-Guillen, José Manuel, Martínez-Lorente, Sara E, Rivero, Rosa M

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Higher Plant-Derived Biostimulants: Mechanisms of Action and Their Role in Mitigating Plant Abiotic Stress von Martínez-Lorente, Sara Esperanza, Martí-Guillén, José Manuel, Pedreño, María Ángeles, Almagro, Lorena, Sabater-Jara, Ana Belén

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Polar solar panels: Arctic and Antarctic microbiomes display similar taxonomic profiles von Tanner, Kristie, Martí, Jose Manuel, Belliure, Josabel, Fernández‐Méndez, Mar, Molina‐Menor, Esther, Peretó, Juli, Porcar, Manuel

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Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering von Roy, Somtirtha, Radivojevic, Tijana, Forrer, Mark, Marti, Jose Manuel, Jonnalagadda, Vamshi, Backman, Tyler, Morrell, William, Plahar, Hector, Kim, Joonhoon, Hillson, Nathan, Garcia Martin, Hector

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Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples von Kimbrel, Jeffrey, Moon, Joseph, Avila-Herrera, Aram, Martí, Jose Manuel, Thissen, James, Mulakken, Nisha, Sandholtz, Sarah H., Ferrell, Tyshawn, Daum, Chris, Hall, Sara, Segelke, Brent, Arrildt, Kathryn T., Messenger, Sharon, Wadford, Debra A., Jaing, Crystal, Allen, Jonathan E., Borucki, Monica K.

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Machine learning for metabolic engineering: A review von Lawson, Christopher E., Martí, Jose Manuel, Radivojevic, Tijana, Jonnalagadda, Sai Vamshi R., Gentz, Reinhard, Hillson, Nathan J., Peisert, Sean, Kim, Joonhoon, Simmons, Blake A., Petzold, Christopher J., Singer, Steven W., Mukhopadhyay, Aindrila, Tanjore, Deepti, Dunn, Joshua G., Garcia Martin, Hector

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Machine learning for metabolic engineering: A review von Lawson, Christopher E., Martí, Jose Manuel, Radivojevic, Tijana, Jonnalagadda, Sai R., Gentz, Reinhard, Hillson, Nathan J., Peisert, Sean, Kim, Joonhoon, Simmons, Blake A., Petzold, Christopher J., Singer, Steven W., Mukhopadhyay, Aindrila, Tanjore, Deepti, Dunn, Joshua G., Garcia Martin, Hector

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Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies von Aram Avila-Herrera, Jeffrey A Kimbrel, Jose Manuel Martí, James Thissen, Edwin A Saada, Tracy Weisenberger, Kathryn T Arrildt, Brent W Segelke, Jonathan E Allen, Adam Zemla, Monica K Borucki

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