Machine learning-based donor permission extraction from informed consent documents von Zhang, Meng, Sankaranarayanapillai, Madhuri, Du, Jingcheng, Xiang, Yang, Manion, Frank J, Harris, Marcelline R, Stansbury, Cooper, Pham, Huy Anh, Tao, Cui

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Machine learning models for abstract screening task - A systematic literature review application for health economics and outcome research von Du, Jingcheng, Soysal, Ekin, Wang, Dong, He, Long, Lin, Bin, Wang, Jingqi, Manion, Frank J, Li, Yeran, Wu, Elise, Yao, Lixia

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Accelerating Evidence Synthesis in Observational Studies: Development of a Living Natural Language Processing-Assisted Intelligent Systematic Literature Review System von Manion, Frank J, Du, Jingcheng, Wang, Dong, He, Long, Lin, Bin, Wang, Jingqi, Wang, Siwei, Eckels, David, Cervenka, Jan, Fiduccia, Peter C, Cossrow, Nicole, Yao, Lixia

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Natural Language Processing-Powered Real-Time Monitoring Solution for Vaccine Sentiments and Hesitancy on Social Media: System Development and Validation von Huang, Liang-Chin, Eiden, Amanda L, He, Long, Annan, Augustine, Wang, Siwei, Wang, Jingqi, Manion, Frank J, Wang, Xiaoyan, Du, Jingcheng, Yao, Lixia

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COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model von Wang, Jingqi, Abu-el-Rub, Noor, Gray, Josh, Pham, Huy Anh, Zhou, Yujia, Manion, Frank J., Liu, Mei, Song, Xing, Xu, Hua, Rouhizadeh, Masoud, Zhang, Yaoyun

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Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study von Manion, Frank J, Robbins, Robert J, Weems, William A, Crowley, Rebecca S

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Enhancing early detection of cognitive decline in the elderly: a comparative study utilizing large language models in clinical notes von Du, Xinsong, Novoa-Laurentiev, John, Plasek, Joseph M., Chuang, Ya-Wen, Wang, Liqin, Marshall, Gad A., Mueller, Stephanie K., Chang, Frank, Datta, Surabhi, Paek, Hunki, Lin, Bin, Wei, Qiang, Wang, Xiaoyan, Wang, Jingqi, Ding, Hao, Manion, Frank J., Du, Jingcheng, Bates, David W., Zhou, Li

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Expressing and Executing Informed Consent Permissions Using SWRL: The All of Us Use Case von Amith, Muhammad, Harris, Marcelline R, Stansbury, Cooper, Ford, Kathleen, Manion, Frank J, Tao, Cui

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FuGEFlow: data model and markup language for flow cytometry von Qian, Yu, Tchuvatkina, Olga, Spidlen, Josef, Wilkinson, Peter, Gasparetto, Maura, Jones, Andrew R, Manion, Frank J, Scheuermann, Richard H, Sekaly, Rafick-Pierre, Brinkman, Ryan R

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Integration of prostate cancer clinical data using an ontology von Min, Hua, Manion, Frank J., Goralczyk, Elizabeth, Wong, Yu-Ning, Ross, Eric, Beck, J. Robert

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Hedging their mets: the use of uncertainty terms in clinical documents and its potential implications when sharing the documents with patients von Hanauer, David A, Liu, Yang, Mei, Qiaozhu, Manion, Frank J, Balis, Ulysses J, Zheng, Kai

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Leveraging EHR Data for Outcomes and Comparative Effectiveness Research in Oncology von Manion, Frank J., Harris, Marcelline R., Buyuktur, Ayse G., Clark, Patricia M., An, Lawrence C., Hanauer, David A.

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Correction: Corrigendum: Genome-wide association study of colorectal cancer identifies six new susceptibility loci von Schumacher, Fredrick R., Schmit, Stephanie L., Jiao, Shuo, Edlund, Christopher K., Wang, Hansong, Zhang, Ben, Hsu, Li, Huang, Shu-Chen, Fischer, Christopher P., Harju, John F., Idos, Gregory E., Lejbkowicz, Flavio, Manion, Frank J., McDonnell, Kevin, Melas, Marilena, Rennert, Hedy S., Shi, Wei, Thomas, Duncan C., Van Den Berg, David J., Hutter, Carolyn M., Aragaki, Aaron K., Butterbach, Katja, Caan, Bette J., Carlson, Christopher S., Chanock, Stephen J., Curtis, Keith R., Fuchs, Charles S., Gala, Manish, Giovannucci, Edward L., Gogarten, Stephanie M., Hayes, Richard B., Henderson, Brian, Hunter, David J., Jackson, Rebecca D., Kolonel, Laurence N., Kooperberg, Charles, Küry, Sébastien, LaCroix, Andrea, Laurie, Cathy C., Laurie, Cecelia A., Lemire, Mathieu, Levine, David, Ma, Jing, Makar, Karen W., Qu, Conghui, Taverna, Darin, Ulrich, Cornelia M., Wu, Kana, Kono, Suminori, West, Dee W., Berndt, Sonja I., Bezieau, Stephane, Brenner, Hermann, Campbell, Peter T., Chan, Andrew T., Chang-Claude, Jenny, Coetzee, Gerhard A., Conti, David V., Duggan, David, Figueiredo, Jane C., Fortini, Barbara K., Gallinger, Steven J., Gauderman, W. James, Giles, Graham, Green, Roger, Haile, Robert, Harrison, Tabitha A., Hoffmeister, Michael, Hopper, John L., Hudson, Thomas J., Jacobs, Eric, Iwasaki, Motoki, Jee, Sun Ha, Jenkins, Mark, Jia, Wei-Hua, Joshi, Amit, Li, Li, Lindor, Noralene M., Matsuo, Keitaro, Moreno, Victor, Mukherjee, Bhramar, Newcomb, Polly A., Potter, John D., Raskin, Leon, Rennert, Gad, Rosse, Stephanie, Severi, Gianluca, Schoen, Robert E., Seminara, Daniela, Shu, Xiao-Ou, Slattery, Martha L., Tsugane, Shoichiro, White, Emily, Xiang, Yong-Bing, Zanke, Brent W., Zheng, Wei, Le Marchand, Loic, Casey, Graham, Gruber, Stephen B., Peters, Ulrike

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Voice-dictated versus typed-in clinician notes: linguistic properties and the potential implications on natural language processing von Zheng, Kai, Mei, Qiaozhu, Yang, Lei, Manion, Frank J, Balis, Ulysses J, Hanauer, David A

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Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk von Zhang, Ben, Jia, Wei-Hua, Matsuda, Koichi, Kweon, Sun-Seog, Matsuo, Keitaro, Xiang, Yong-Bing, Shin, Aesun, Jee, Sun Ha, Kim, Dong-Hyun, Cai, Qiuyin, Long, Jirong, Shi, Jiajun, Wen, Wanqing, Yang, Gong, Zhang, Yanfeng, Li, Chun, Li, Bingshan, Guo, Yan, Ren, Zefang, Ji, Bu-Tian, Pan, Zhi-Zhong, Takahashi, Atsushi, Shin, Min-Ho, Matsuda, Fumihiko, Gao, Yu-Tang, Oh, Jae Hwan, Kim, Soriul, Ahn, Yoon-Ok, Chan, Andrew T, Chang-Claude, Jenny, Slattery, Martha L, Gruber, Stephen B, Schumacher, Fredrick R, Stenzel, Stephanie L, Casey, Graham, Kim, Hyeong-Rok, Jeong, Jin-Young, Park, Ji Won, Li, Hong-Lan, Hosono, Satoyo, Cho, Sang-Hee, Kubo, Michiaki, Shu, Xiao-Ou, Zeng, Yi-Xin, Zheng, Wei

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WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis von Bidaut, Ghislain, Manion, Frank J., Garcia, Christophe, Ochs, Michael F.

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Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk von Zeng, Chenjie, Matsuda, Koichi, Jia, Wei-Hua, Chang, Jiang, Kweon, Sun-Seog, Xiang, Yong-Bing, Shin, Aesun, Jee, Sun Ha, Kim, Dong-Hyun, Zhang, Ben, Cai, Qiuyin, Guo, Xingyi, Long, Jirong, Wang, Nan, Courtney, Regina, Pan, Zhi-Zhong, Wu, Chen, Takahashi, Atsushi, Shin, Min-Ho, Matsuo, Keitaro, Matsuda, Fumihiko, Gao, Yu-Tang, Oh, Jae Hwan, Kim, Soriul, Jung, Keum Ji, Ahn, Yoon-Ok, Ren, Zefang, Li, Hong-Lan, Wu, Jie, Shi, Jiajun, Wen, Wanqing, Yang, Gong, Li, Bingshan, Ji, Bu-Tian, Brenner, Hermann, Schoen, Robert E, Küry, Sébastien, Gruber, Stephen B, Schumacher, Fredrick R, Stenzel, Stephanie L, Casey, Graham, Hopper, John L, Jenkins, Mark A, Kim, Hyeong-Rok, Jeong, Jin-Young, Park, Ji Won, Tajima, Kazuo, Cho, Sang-Hee, Kubo, Michiaki, Shu, Xiao-Ou, Lin, Dongxin, Zeng, Yi-Xin, Zheng, Wei

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Genome-wide association study of colorectal cancer identifies six new susceptibility loci von Schumacher, Fredrick R., Schmit, Stephanie L., Jiao, Shuo, Edlund, Christopher K., Wang, Hansong, Zhang, Ben, Hsu, Li, Huang, Shu-Chen, Fischer, Christopher P., Harju, John F., Idos, Gregory E., Lejbkowicz, Flavio, Manion, Frank J., McDonnell, Kevin, McNeil, Caroline E., Melas, Marilena, Rennert, Hedy S., Shi, Wei, Thomas, Duncan C., Van Den Berg, David J., Hutter, Carolyn M., Aragaki, Aaron K., Butterbach, Katja, Caan, Bette J., Carlson, Christopher S., Chanock, Stephen J., Curtis, Keith R., Fuchs, Charles S., Gala, Manish, Giovannucci, Edward L., Gogarten, Stephanie M., Hayes, Richard B., Henderson, Brian, Hunter, David J., Jackson, Rebecca D., Kolonel, Laurence N., Kooperberg, Charles, Küry, Sébastien, LaCroix, Andrea, Laurie, Cathy C., Laurie, Cecelia A., Lemire, Mathieu, Levine, David, Ma, Jing, Makar, Karen W., Qu, Conghui, Taverna, Darin, Ulrich, Cornelia M., Wu, Kana, Kono, Suminori, West, Dee W., Berndt, Sonja I., Brenner, Hermann, Campbell, Peter T., Chan, Andrew T., Chang-Claude, Jenny, Coetzee, Gerhard A., Conti, David V., Duggan, David, Figueiredo, Jane C., Fortini, Barbara K., Gallinger, Steven J., Gauderman, W. James, Giles, Graham, Green, Roger, Haile, Robert, Harrison, Tabitha A., Hoffmeister, Michael, Hopper, John L., Hudson, Thomas J., Jacobs, Eric, Iwasaki, Motoki, Jee, Sun Ha, Jenkins, Mark, Jia, Wei-Hua, Joshi, Amit, Li, Li, Lindor, Noralene M., Matsuo, Keitaro, Moreno, Victor, Mukherjee, Bhramar, Newcomb, Polly A., Potter, John D., Raskin, Leon, Rennert, Gad, Rosse, Stephanie, Severi, Gianluca, Schoen, Robert E., Seminara, Daniela, Shu, Xiao-Ou, Slattery, Martha L., Tsugane, Shoichiro, White, Emily, Xiang, Yong-Bing, Zanke, Brent W., Zheng, Wei, Le Marchand, Loic, Casey, Graham, Gruber, Stephen B., Peters, Ulrike

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FGDP: functional genomics data pipeline for automated, multiple microarray data analyses von Grant, Jeffrey D., Somers, Luke A., Zhang, Yue, Manion, Frank J., Bidaut, Ghislain, Ochs, Michael F.

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ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database von KOSSENKOV, Andrew, MANION, Frank J, KOROTKOV, Eugene, MOLOSHOK, Thomas D, OCHS, Michael F

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