Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes von Hultman, Jenni, Waldrop, Mark P., Mackelprang, Rachel, David, Maude M., McFarland, Jack, Blazewicz, Steven J., Harden, Jennifer, Turetsky, Merritt R., McGuire, A. David, Shah, Manesh B., VerBerkmoes, Nathan C., Lee, Lang Ho, Mavrommatis, Kostas, Jansson, Janet K.

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Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models von Garvin, Michael R., Prates, Erica T., Pavicic, Mirko, Jones, Piet, Amos, B. Kirtley, Geiger, Armin, Shah, Manesh B., Streich, Jared, Gazolla, Joao Gabriel Felipe Machado, Kainer, David, Cliff, Ashley, Romero, Jonathon, Keith, Nathan, Brown, James B., Jacobson, Daniel

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Locomotor recovery following contusive spinal cord injury does not require oligodendrocyte remyelination von Duncan, Greg J., Manesh, Sohrab B., Hilton, Brett J., Assinck, Peggy, Liu, Jie, Moulson, Aaron, Plemel, Jason R., Tetzlaff, Wolfram

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Myelinogenic Plasticity of Oligodendrocyte Precursor Cells following Spinal Cord Contusion Injury von Assinck, Peggy, Duncan, Greg J, Plemel, Jason R, Lee, Michael J, Stratton, Jo A, Manesh, Sohrab B, Liu, Jie, Ramer, Leanne M, Kang, Shin H, Bergles, Dwight E, Biernaskie, Jeff, Tetzlaff, Wolfram

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Insights into the Structure and Metabolic Function of Microbes That Shape Pelagic Iron-Rich Aggregates (“Iron Snow”) von SHIPENG LU, CHOUREY, Karuna, REICHE, Marco, NIETZSCHE, Sandor, SHAH, Manesh B, NEU, Thomas R, HETTICH, Robert L, KÜSEL, Kirsten

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Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data von Walker, Angelica M., Cliff, Ashley, Romero, Jonathon, Shah, Manesh B., Jones, Piet, Felipe Machado Gazolla, Joao Gabriel, Jacobson, Daniel A, Kainer, David

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New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species “Leptospirillum Group IV UBA BS” von ALIAGA GOLTSMAN, Daniela S, DASARI, Mauna, THOMAS, Brian C, SHAH, Manesh B, VERBERKMOES, Nathan C, HETTICH, Robert L, BANFIELD, Jillian F

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Use of Label-Free Quantitative Proteomics To Distinguish the Secreted Cellulolytic Systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis von LOCHNER, Adriane, GIANNONE, Richard J, RODRIGUEZ, Miguel, SHAH, Manesh B, MIELENZ, Jonathan R, KELLER, Martin, ANTRANIKIAN, Garabed, GRAHAM, David E, HETTICH, Robert L

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Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid... von ALIAGA GOLTSMAN, Daniela S, DENEF, Vincent J, BAKER, Brett J, HAUSER, Loren, LAND, Miriam, SHAH, Manesh B, THELEN, Michael P, HETTICH, Robert L, BANFIELD, Jillian F, SINGER, Steven W, VERBERKMOES, Nathan C, LEFSRUD, Mark, MUELLER, Ryan S, DICK, Gregory J, SUN, Christine L, WHEELER, Korin E, ZEMLA, Adam

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Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation von Wilkins, Michael J, VerBerkmoes, Nathan C, Williams, Kenneth H, Callister, Stephen J, Mouser, Paula J, Elifantz, Hila, N'Guessan, A. Lucie, Thomas, Brian C, Nicora, Carrie D, Shah, Manesh B, Abraham, Paul, Lipton, Mary S, Lovley, Derek R, Hettich, Robert L, Long, Philip E, Banfield, Jillian F

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Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteom... von Men, Yujie, Feil, Helene, VerBerkmoes, Nathan C, Shah, Manesh B, Johnson, David R, Lee, Patrick K H, West, Kimberlee A, Zinder, Stephen H, Andersen, Gary L, Alvarez-Cohen, Lisa

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The fate and function of oligodendrocyte progenitor cells after traumatic spinal cord injury von Duncan, Greg J., Manesh, Sohrab B., Hilton, Brett J., Assinck, Peggy, Plemel, Jason R., Tetzlaff, Wolfram

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Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach von Prates, Erica T., Garvin, Michael R., Jones, Piet, Miller, J. Izaak, Sullivan, Kyle A., Cliff, Ashley, Gazolla, Joao Gabriel Felipe Machado, Shah, Manesh B., Walker, Angelica M., Lane, Matthew, Rentsch, Christopher T., Justice, Amy, Pavicic, Mirko, Romero, Jonathon, Jacobson, Daniel

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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches von Yang, Xiaohan, Tschaplinski, Timothy J, Hurst, Gregory B, Jawdy, Sara, Abraham, Paul E, Lankford, Patricia K, Adams, Rachel M, Shah, Manesh B, Hettich, Robert L, Lindquist, Erika, Kalluri, Udaya C, Gunter, Lee E, Pennacchio, Christa, Tuskan, Gerald A

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Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community von Handley, Kim M, VerBerkmoes, Nathan C, Steefel, Carl I, Williams, Kenneth H, Sharon, Itai, Miller, Christopher S, Frischkorn, Kyle R, Chourey, Karuna, Thomas, Brian C, Shah, Manesh B, Long, Philip E, Hettich, Robert L, Banfield, Jillian F

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Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria von Allen, Eric E, Shah, Manesh B, Goltsman, Daniela, Banfield, Jillian F, Richardson, Paul, Thelen, Michael P, VerBerkmoes, Nathan C, Hettich, Robert L, Tyson, Gene W, Lo, Ian, Detter, J. Chris, Ram, Rachna J, DiBartolo, Genevieve, Denef, Vincent J

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Interactive Semantic Image Retrieval von Patil, Pushpa B, Kokare, Manesh B

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Ecological distribution and population physiology defined by proteomics in a natural microbial community von Banfield, Jillian F, Mueller, Ryan S, Denef, Vincent J, Kalnejais, Linda H, Suttle, K Blake, Thomas, Brian C, Wilmes, Paul, Smith, Richard L, Nordstrom, D Kirk, McCleskey, R Blaine, Shah, Manesh B, VerBerkmoes, Nathan C, Hettich, Robert L

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Myelin inhibits oligodendroglial maturation and regulates oligodendrocytic transcription factor expression von Plemel, Jason R., Manesh, Sohrab B., Sparling, Joseph S., Tetzlaff, Wolfram

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Myelin regulatory factor drives remyelination in multiple sclerosis von Duncan, Greg J., Plemel, Jason R., Assinck, Peggy, Manesh, Sohrab B., Muir, Fraser G. W., Hirata, Ryan, Berson, Matan, Liu, Jie, Wegner, Michael, Emery, Ben, Moore, G. R. Wayne, Tetzlaff, Wolfram

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