Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21 von Kim, Dae-Seok, Camacho, Cristel V., Nagari, Anusha, Malladi, Venkat S., Challa, Sridevi, Kraus, W. Lee

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Novel long non-coding RNAs associated with inflammation and macrophage activation in human von Chini, Avisankar, Guha, Prarthana, Malladi, Venkat S., Guo, Zibiao, Mandal, Subhrangsu S.

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Open collaborative writing with Manubot von Himmelstein, Daniel S, Rubinetti, Vincent, Slochower, David R, Hu, Dongbo, Malladi, Venkat S, Greene, Casey S, Gitter, Anthony

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ENCODE data in the UCSC Genome Browser: year 5 update von Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James

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Cardiac Reprogramming Factors Synergistically Activate Genome-wide Cardiogenic Stage-Specific Enhancers von Hashimoto, Hisayuki, Wang, Zhaoning, Garry, Glynnis A., Malladi, Venkat S., Botten, Giovanni A., Ye, Wenduo, Zhou, Huanyu, Osterwalder, Marco, Dickel, Diane E., Visel, Axel, Liu, Ning, Bassel-Duby, Rhonda, Olson, Eric N.

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A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra von Henry, Gervaise H., Malewska, Alicia, Joseph, Diya B., Malladi, Venkat S., Lee, Jeon, Torrealba, Jose, Mauck, Ryan J., Gahan, Jeffrey C., Raj, Ganesh V., Roehrborn, Claus G., Hon, Gary C., MacConmara, Malcolm P., Reese, Jeffrey C., Hutchinson, Ryan C., Vezina, Chad M., Strand, Douglas W.

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Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis von Franco, Hector L, Nagari, Anusha, Malladi, Venkat S, Li, Wenqian, Xi, Yuanxin, Richardson, Dana, Allton, Kendra L, Tanaka, Kaori, Li, Jing, Murakami, Shino, Keyomarsi, Khandan, Bedford, Mark T, Shi, Xiaobing, Li, Wei, Barton, Michelle C, Dent, Sharon Y R, Kraus, W Lee

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Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes von Hsieh, Wen-Chuan, Sutter, Benjamin M, Ruess, Holly, Barnes, Spencer D, Malladi, Venkat S, Tu, Benjamin P

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The UCSC Genome Browser database: extensions and updates 2013 von Meyer, Laurence R, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Kuhn, Robert M, Wong, Matthew, Sloan, Cricket A, Rosenbloom, Kate R, Roe, Greg, Rhead, Brooke, Raney, Brian J, Pohl, Andy, Malladi, Venkat S, Li, Chin H, Lee, Brian T, Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M, Fujita, Pauline A, Dreszer, Timothy R, Diekhans, Mark, Cline, Melissa S, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W James

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Improving Renal Tumor Biopsy Prognostication With BAP1 Analyses von Kapur, Payal, Setoodeh, Sasan, Araj, Ellen, Yan, Jingsheng, Malladi, Venkat S, Cadeddu, Jeffrey A, Christie, Alana, Brugarolas, James

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Germline and sporadic mTOR pathway mutations in low-grade oncocytic tumor of the kidney von Kapur, Payal, Gao, Ming, Zhong, Hua, Chintalapati, Suneetha, Mitui, Midori, Barnes, Spencer D., Zhou, Qinbo, Miyata, Jeffrey, Carrillo, Deyssy, Malladi, Venkat S., Rakheja, Dinesh, Pedrosa, Ivan, Xu, Lin, Kinch, Lisa, Brugarolas, James

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ENCODE data at the ENCODE portal von Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg, Podduturi, Nikhil R, Tanaka, Forrest, Hong, Eurie L, Cherry, J Michael

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Human pancreatic cancer cell exosomes, but not human normal cell exosomes, act as an initiator in cell transformation von Stefanius, Karoliina, Servage, Kelly, de Souza Santos, Marcela, Gray, Hillery Fields, Toombs, Jason E, Chimalapati, Suneeta, Kim, Min S, Malladi, Venkat S, Brekken, Rolf, Orth, Kim

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Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation von Zhang, Zeda, Zhou, Chuanli, Li, Xiaoling, Barnes, Spencer D., Deng, Su, Hoover, Elizabeth, Chen, Chi-Chao, Lee, Young Sun, Zhang, Yanxiao, Wang, Choushi, Metang, Lauren A., Wu, Chao, Tirado, Carla Rodriguez, Johnson, Nickolas A., Wongvipat, John, Navrazhina, Kristina, Cao, Zhen, Choi, Danielle, Huang, Chun-Hao, Linton, Eliot, Chen, Xiaoping, Liang, Yupu, Mason, Christopher E., de Stanchina, Elisa, Abida, Wassim, Lujambio, Amaia, Li, Sheng, Lowe, Scott W., Mendell, Joshua T., Malladi, Venkat S., Sawyers, Charles L., Mu, Ping

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A multi-omic single-cell landscape of human gynecologic malignancies von Regner, Matthew J., Wisniewska, Kamila, Garcia-Recio, Susana, Thennavan, Aatish, Mendez-Giraldez, Raul, Malladi, Venkat S., Hawkins, Gabrielle, Parker, Joel S., Perou, Charles M., Bae-Jump, Victoria L., Franco, Hector L.

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Single‐cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions von Joseph, Diya B, Henry, Gervaise H, Malewska, Alicia, Reese, Jeffrey C, Mauck, Ryan J, Gahan, Jeffrey C, Hutchinson, Ryan C, Malladi, Venkat S, Roehrborn, Claus G, Vezina, Chad M, Strand, Douglas W

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Computational Approaches for Mining GRO-Seq Data to Identify and Characterize Active Enhancers von Nagari, Anusha, Murakami, Shino, Malladi, Venkat S., Kraus, W. Lee

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Identification and characterization of an alternative cancer-derived PD-L1 splice variant von Hassounah, Nadia B., Malladi, Venkat S., Huang, Yi, Freeman, Samuel S., Beauchamp, Ellen M., Koyama, Shohei, Souders, Nicholas, Martin, Sunil, Dranoff, Glenn, Wong, Kwok-Kin, Pedamallu, Chandra S., Hammerman, Peter S., Akbay, Esra A.

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Urethral luminal epithelia are castration‐insensitive cells of the proximal prostate von Joseph, Diya B., Henry, Gervaise H., Malewska, Alicia, Iqbal, Nida S., Ruetten, Hannah M., Turco, Anne E., Abler, Lisa L., Sandhu, Simran K., Cadena, Mark T., Malladi, Venkat S., Reese, Jeffrey C., Mauck, Ryan J., Gahan, Jeffrey C., Hutchinson, Ryan C., Roehrborn, Claus G., Baker, Linda A., Vezina, Chad M., Strand, Douglas W.

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Histone modification profiling in breast cancer cell lines highlights commonalities and differences among subtypes von Xi, Yuanxin, Shi, Jiejun, Li, Wenqian, Tanaka, Kaori, Allton, Kendra L, Richardson, Dana, Li, Jing, Franco, Hector L, Nagari, Anusha, Malladi, Venkat S, Coletta, Luis Della, Simper, Melissa S, Keyomarsi, Khandan, Shen, Jianjun, Bedford, Mark T, Shi, Xiaobing, Barton, Michelle C, Kraus, W Lee, Li, Wei, Dent, Sharon Y R

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