The EMBL-EBI bioinformatics web and programmatic tools framework von Li, Weizhong, Cowley, Andrew, Uludag, Mahmut, Gur, Tamer, McWilliam, Hamish, Squizzato, Silvano, Park, Young Mi, Buso, Nicola, Lopez, Rodrigo

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Analysis Tool Web Services from the EMBL-EBI von McWilliam, Hamish, Li, Weizhong, Uludag, Mahmut, Squizzato, Silvano, Park, Young Mi, Buso, Nicola, Cowley, Andrew Peter, Lopez, Rodrigo

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Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases von Priyam, Anurag, Woodcroft, Ben J, Rai, Vivek, Moghul, Ismail, Munagala, Alekhya, Ter, Filip, Chowdhary, Hiten, Pieniak, Iwo, Maynard, Lawrence J, Gibbins, Mark Anthony, Moon, HongKee, Davis-Richardson, Austin, Uludag, Mahmut, Watson-Haigh, Nathan S, Challis, Richard, Nakamura, Hiroyuki, Favreau, Emeline, Gómez, Esteban A, Pluskal, Tomás, Leonard, Guy, Rumpf, Wolfgang, Wurm, Yannick

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Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes von Kafkas, Șenay, Abdelhakim, Marwa, Uludag, Mahmut, Althagafi, Azza, Alghamdi, Malak, Hoehndorf, Robert

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EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats von Ison, Jon, Kalas, Matús, Jonassen, Inge, Bolser, Dan, Uludag, Mahmut, McWilliam, Hamish, Malone, James, Lopez, Rodrigo, Pettifer, Steve, Rice, Peter

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Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA von Albaradei, Somayah, Magana-Mora, Arturo, Thafar, Maha, Uludag, Mahmut, Bajic, Vladimir B., Gojobori, Takashi, Essack, Magbubah, Jankovic, Boris R.

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Author Correction: DES-Tcell is a knowledgebase for exploring immunology-related literature von AlSaieedi, Ahdab, Salhi, Adil, Tifratene, Faroug, Raies, Arwa Bin, Hungler, Arnaud, Uludag, Mahmut, Van Neste, Christophe, Bajic, Vladimir B., Gojobori, Takashi, Essack, Magbubah

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DES-Tcell is a knowledgebase for exploring immunology-related literature von AlSaieedi, Ahdab, Salhi, Adil, Tifratene, Faroug, Raies, Arwa Bin, Hungler, Arnaud, Uludag, Mahmut, Van Neste, Christophe, Bajic, Vladimir B., Gojobori, Takashi, Essack, Magbubah

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Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models von Albaradei, Somayah, Uludag, Mahmut, Thafar, Maha A., Gojobori, Takashi, Essack, Magbubah, Gao, Xin

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OncoRTT: Predicting novel oncology-related therapeutic targets using BERT embeddings and omics features von Thafar, Maha A, Albaradei, Somayah, Uludag, Mahmut, Alshahrani, Mona, Gojobori, Takashi, Essack, Magbubah, Gao, Xin

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DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases von Bajic, Vladan P, Salhi, Adil, Lakota, Katja, Radovanovic, Aleksandar, Razali, Rozaimi, Zivkovic, Lada, Spremo-Potparevic, Biljana, Uludag, Mahmut, Tifratene, Faroug, Motwalli, Olaa, Marchand, Benoit, Bajic, Vladimir B, Gojobori, Takashi, Isenovic, Esma R, Essack, Magbubah

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Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications von Alshahrani, Mona, Almansour, Abdullah, Alkhaldi, Asma, Thafar, Maha A, Uludag, Mahmut, Essack, Magbubah, Hoehndorf, Robert

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The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI von Squizzato, Silvano, Park, Young Mi, Buso, Nicola, Gur, Tamer, Cowley, Andrew, Li, Weizhong, Uludag, Mahmut, Pundir, Sangya, Cham, Jennifer A, McWilliam, Hamish, Lopez, Rodrigo

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Global surveillance of emerging SARS-CoV-2 variants von Uludağ, Mahmut, Incitti, Roberto, Gao, Xin, Heeney, Jonathan L, Gojobori, Takashi, Alam, Intikhab

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MetastaSite : Predicting metastasis to different sites using deep learning with gene expression data von Albaradei, Somayah, Albaradei, Abdurhman, Alsaedi, Asim, Uludag, Mahmut, Thafar, Maha A, Gojobori, Takashi, Essack, Magbubah, Gao, Xin

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Corrigendum: Metagenomic probing toward an atlas of the taxonomic and metabolic foundations of the global ocean genome von Laiolo, Elisa, Alam, Intikhab, Uludag, Mahmut, Jamil, Tahira, Agusti, Susana, Gojobori, Takashi, Acinas, Silvia G., Gasol, Josep M., Duarte, Carlos M.

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Metagenomic probing toward an atlas of the taxonomic and metabolic foundations of the global ocean genome von Laiolo, Elisa, Alam, Intikhab, Uludag, Mahmut, Jamil, Tahira, Agusti, Susana, Gojobori, Takashi, Acinas, Silvia G., Gasol, Josep M., Duarte, Carlos M.

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DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases von Gojobori, Takashi, Isenovic, Esma R., Bajic, Vladan P., Zaric, Bozidarka, Hungler, Arnaud, Uludag, Mahmut, Tifratene, Faroug, Bin Raies, Arwa, Van Neste, Christophe, Salhi, Adil, Essack, Magbubah, Zafirovic, Sonja

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Automated Counting of Colony Forming Units Using Deep Transfer Learning From a Model for Congested Scenes Analysis von Albaradei, Somayah A., Napolitano, Francesco, Uludag, Mahmut, Thafar, Maha, Napolitano, Sara, Essack, Magbubah, Bajic, Vladimir B., Gao, Xin

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FARNA: knowledgebase of inferred functions of non-coding RNA transcripts von Alam, Tanvir, Uludag, Mahmut, Essack, Magbubah, Salhi, Adil, Ashoor, Haitham, Hanks, John B, Kapfer, Craig, Mineta, Katsuhiko, Gojobori, Takashi, Bajic, Vladimir B

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