Automatic quality control of single-cell and single-nucleus RNA-seq using valiDrops von Kavaliauskaite, Gabija, Madsen, Jesper Grud Skat

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RNA-Seq and Mass-Spectrometry-Based Lipidomics Reveal Extensive Changes of Glycerolipid Pathways in Brown Adipose Tissue in Response to Cold von Marcher, Ann-Britt, Loft, Anne, Nielsen, Ronni, Vihervaara, Terhi, Madsen, Jesper Grud Skat, Sysi-Aho, Marko, Ekroos, Kim, Mandrup, Susanne

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iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data von Madsen, Jesper Grud Skat, Schmidt, Søren Fisker, Larsen, Bjørk Ditlev, Loft, Anne, Nielsen, Ronni, Mandrup, Susanne

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Integrative Genomics Outlines a Biphasic Glucose Response and a ChREBP-RORγ Axis Regulating Proliferation in β Cells von Schmidt, Søren Fisker, Madsen, Jesper Grud Skat, Frafjord, Kari Østerli, Poulsen, Lars la Cour, Salö, Sofia, Boergesen, Michael, Loft, Anne, Larsen, Bjørk Ditlev, Madsen, Maria Stahl, Holst, Jens Juul, Maechler, Pierre, Dalgaard, Louise Torp, Mandrup, Susanne

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Glucolipotoxicity promotes the capacity of the glycerolipid/NEFA cycle supporting the secretory response of pancreatic beta cells von Oberhauser, Lucie, Jiménez-Sánchez, Cecilia, Madsen, Jesper Grud Skat, Duhamel, Dominique, Mandrup, Susanne, Brun, Thierry, Maechler, Pierre

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JOINTLY: interpretable joint clustering of single-cell transcriptomes von Møller, Andreas Fønss, Madsen, Jesper Grud Skat

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Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation von Siersbæk, Rasmus, Madsen, Jesper Grud Skat, Javierre, Biola Maria, Nielsen, Ronni, Bagge, Emilie Kristine, Cairns, Jonathan, Wingett, Steven William, Traynor, Sofie, Spivakov, Mikhail, Fraser, Peter, Mandrup, Susanne

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Integrated analysis of motif activity and gene expression changes of transcription factors von Madsen, Jesper Grud Skat, Rauch, Alexander, Van Hauwaert, Elvira Laila, Schmidt, Søren Fisker, Winnefeld, Marc, Mandrup, Susanne

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AMPK Profiling in Rodent and Human Pancreatic Beta-Cells under Nutrient-Rich Metabolic Stress von Brun, Thierry, Jiménez-Sánchez, Cecilia, Madsen, Jesper Grud Skat, Hadadi, Noushin, Duhamel, Dominique, Bartley, Clarissa, Oberhauser, Lucie, Trajkovski, Mirko, Mandrup, Susanne, Maechler, Pierre

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Isolation of nuclei from mouse white adipose tissues for single-nucleus genomics von Van Hauwaert, Elvira Laila, Gammelmark, Ellen, Sárvári, Anitta Kinga, Larsen, Lena, Nielsen, Ronni, Madsen, Jesper Grud Skat, Mandrup, Susanne

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Plasticity of Epididymal Adipose Tissue in Response to Diet-Induced Obesity at Single-Nucleus Resolution von Sárvári, Anitta Kinga, Van Hauwaert, Elvira Laila, Markussen, Lasse Kruse, Gammelmark, Ellen, Marcher, Ann-Britt, Ebbesen, Morten Frendø, Nielsen, Ronni, Brewer, Jonathan Richard, Madsen, Jesper Grud Skat, Mandrup, Susanne

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Analysis of Enhancers and Transcriptional Networks in Thermogenic Adipocytes von Loft, Anne, Andersen, Maja Worm, Madsen, Jesper Grud Skat, Mandrup, Susanne

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Acute TNF-induced repression of cell identity genes is mediated by NFκB-directed redistribution of cofactors from super-enhancers von Schmidt, Søren Fisker, Larsen, Bjørk Ditlev, Loft, Anne, Nielsen, Ronni, Madsen, Jesper Grud Skat, Mandrup, Susanne

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Browning of human adipocytes requires KLF11 and reprogramming of PPARγ superenhancers von Loft, Anne, Forss, Isabel, Siersbæk, Majken Storm, Schmidt, Søren Fisker, Larsen, Ann-Sofie Bøgh, Madsen, Jesper Grud Skat, Pisani, Didier F, Nielsen, Ronni, Aagaard, Mads Malik, Mathison, Angela, Neville, Matt J, Urrutia, Raul, Karpe, Fredrik, Amri, Ez-Zoubir, Mandrup, Susanne

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Abstract 2958: Development of a superenhancer element-associated transcription factor signature in primary tumors for the identification of liver metastasis in colorectal cancer pa... von Roy, Roshni, Madsen, Jesper Grud, Yamada, Yasuhide, Okugawa, Yoshinaga, Toiyama, Yuji, Mandrup, Susanne, Goel, Ajay

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