A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification von Macqueen, Daniel J., Johnston, Ian A.

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Harnessing genomics to fast-track genetic improvement in aquaculture von Houston, Ross D., Bean, Tim P., Macqueen, Daniel J., Gundappa, Manu Kumar, Jin, Ye Hwa, Jenkins, Tom L., Selly, Sarah Louise C., Martin, Samuel A. M., Stevens, Jamie R., Santos, Eduarda M., Davie, Andrew, Robledo, Diego

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Growth and the regulation of myotomal muscle mass in teleost fish von Johnston, Ian A, Bower, Neil I, Macqueen, Daniel J

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Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor von Redmond, Anthony K., Casey, Dearbhaile, Gundappa, Manu Kumar, Macqueen, Daniel J., McLysaght, Aoife

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A versatile nuclei extraction protocol for single nucleus sequencing in non-model species-Optimization in various Atlantic salmon tissues von Ruiz Daniels, Rose, Taylor, Richard S, Dobie, Ross, Salisbury, Sarah, Furniss, James J, Clark, Emily, Macqueen, Daniel J, Robledo, Diego

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From FAANG to fork: application of highly annotated genomes to improve farmed animal production von Clark, Emily L., Archibald, Alan L., Daetwyler, Hans D., Groenen, Martien A. M., Harrison, Peter W., Houston, Ross D., Kuhn, Christa, Lien, Sigbjorn, Macqueen, Daniel J., Reecy, James M., Robledo, Diego, Watson, Mick, Tuggle, Christopher K., Giuffra, Elisabetta

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Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes von Garcia de la Serrana, Daniel, Macqueen, Daniel J

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High-throughput proteomic profiling of the fish liver following bacterial infection von Causey, Dwight R, Pohl, Moritz A N, Stead, David A, Martin, Samuel A M, Secombes, Christopher J, Macqueen, Daniel J

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Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification von Robertson, Fiona M, Gundappa, Manu Kumar, Grammes, Fabian, Hvidsten, Torgeir R, Redmond, Anthony K, Lien, Sigbjørn, Martin, Samuel A M, Holland, Peter W H, Sandve, Simen R, Macqueen, Daniel J

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Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons von Redmond, Anthony K, Zou, Jun, Secombes, Christopher J, Macqueen, Daniel J, Dooley, Helen

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Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication von Gillard, Gareth B., Gronvold, Lars, Rosaeg, Line L., Holen, Matilde Mengkrog, Monsen, Oystein, Koop, Ben F., Rondeau, Eric B., Gundappa, Manu Kumar, Mendoza, John, Macqueen, Daniel J., Rohlfs, Rori, Sandve, Simen R., Hvidsten, Torgeir R.

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Single cell genomics as a transformative approach for aquaculture research and innovation von Daniels, Rose Ruiz, Taylor, Richard S, Robledo, Diego, Macqueen, Daniel J

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Evolution of the multifaceted eukaryotic akirin gene family von Macqueen, Daniel J, Johnston, Ian A

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Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota von Gubry-Rangin, Cécile, Kratsch, Christina, Williams, Tom A., McHardy, Alice C., Embley, T. Martin, Prosser, James I., Macqueen, Daniel J.

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Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes von Macqueen, Daniel J, Garcia de la Serrana, Daniel, Johnston, Ian A

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Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.) von Gundappa, Manu Kumar, Peñaloza, Carolina, Regan, Tim, Boutet, Isabelle, Tanguy, Arnaud, Houston, Ross D., Bean, Tim P., Macqueen, Daniel J.

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Single cell transcriptomics of Atlantic salmon ( Salmo salar L.) liver reveals cellular heterogeneity and immunological responses to challenge by Aeromonas salmonicida von Taylor, Richard S, Ruiz Daniels, Rose, Dobie, Ross, Naseer, Shahmir, Clark, Thomas C, Henderson, Neil C, Boudinot, Pierre, Martin, Samuel A M, Macqueen, Daniel J

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The structural variation landscape in 492 Atlantic salmon genomes von Bertolotti, Alicia C., Layer, Ryan M., Gundappa, Manu Kumar, Gallagher, Michael D., Pehlivanoglu, Ege, Nome, Torfinn, Robledo, Diego, Kent, Matthew P., Røsæg, Line L., Holen, Matilde M., Mulugeta, Teshome D., Ashton, Thomas J., Hindar, Kjetil, Sægrov, Harald, Florø-Larsen, Bjørn, Erkinaro, Jaakko, Primmer, Craig R., Bernatchez, Louis, Martin, Samuel A. M., Johnston, Ian A., Sandve, Simen R., Lien, Sigbjørn, Macqueen, Daniel J.

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Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets von Redmond, Anthony K, Macqueen, Daniel J, Dooley, Helen

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Organized B cell sites in cartilaginous fishes reveal the evolutionary foundation of germinal centers von Matz, Hanover, Taylor, Richard S., Redmond, Anthony K., Hill, Thomas M., Ruiz Daniels, Rose, Beltran, Mariana, Henderson, Neil C., Macqueen, Daniel J., Dooley, Helen

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