The ProteomeXchange consortium at 10 years: 2023 update von Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio

Volltext

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline von Sharma, Vagisha, Eckels, Josh, Schilling, Birgit, Ludwig, Christina, Jaffe, Jacob D., MacCoss, Michael J., MacLean, Brendan

Volltext

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics von Pino, Lindsay K., Searle, Brian C., Bollinger, James G., Nunn, Brook, MacLean, Brendan, MacCoss, Michael J.

Volltext

Sampling the proteome by emerging single-molecule and mass spectrometry methods von MacCoss, Michael J., Alfaro, Javier Antonio, Faivre, Danielle A., Wu, Christine C., Wanunu, Meni, Slavov, Nikolai

Volltext

The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics von Deutsch, Eric W, Bandeira, Nuno, Sharma, Vagisha, Perez-Riverol, Yasset, Carver, Jeremy J, Kundu, Deepti J, García-Seisdedos, David, Jarnuczak, Andrew F, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, Hermjakob, Henning, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan A

Volltext

Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry von Searle, Brian C., Pino, Lindsay K., Egertson, Jarrett D., Ting, Ying S., Lawrence, Robert T., MacLean, Brendan X., Villén, Judit, MacCoss, Michael J.

Volltext

Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut von Kruse, Angela, Fattah-Hosseini, Somayeh, Saha, Surya, Johnson, Richard, Warwick, EricaRose, Sturgeon, Kasie, Mueller, Lukas, MacCoss, Michael J, Shatters, Jr, Robert G, Cilia Heck, Michelle

Volltext

Using iRT, a normalized retention time for more targeted measurement of peptides von Escher, Claudia, Reiter, Lukas, MacLean, Brendan, Ossola, Reto, Herzog, Franz, Chilton, John, MacCoss, Michael J., Rinner, Oliver

Volltext

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments von MacLean, Brendan, Tomazela, Daniela M., Shulman, Nicholas, Chambers, Matthew, Finney, Gregory L., Frewen, Barbara, Kern, Randall, Tabb, David L., Liebler, Daniel C., MacCoss, Michael J.

Volltext

The PINK1-Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo von Vincow, Evelyn S., Merrihew, Gennifer, Thomas, Ruth E., Shulman, Nicholas J., Beyer, Richard P., MacCoss, Michael J., Pallanck, Leo J.

Volltext

Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice von Chiao, Ying Ann, Zhang, Huiliang, Sweetwyne, Mariya, Whitson, Jeremy, Ting, Ying Sonia, Basisty, Nathan, Pino, Lindsay K., Quarles, Ellen, Ngoc-Han Nguyen, Campbell, Matthew D., Zhang, Tong, Gaffrey, Matthew J., Merrihew, Gennifer, Wang, Lu, Yue, Yongping, Duan, Dongsheng, Granzier, Henk L., Szeto, Hazel H., Qian, Wei-Jun, Marcinek, David, MacCoss, Michael J., Rabinovitch, Peter

Volltext

PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data von Ting, Ying S, Egertson, Jarrett D, Bollinger, James G, Searle, Brian C, Payne, Samuel H, Noble, William Stafford, MacCoss, Michael J

Volltext

TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis von Kubota, Akane, Ito, Shogo, Shim, Jae Sung, Johnson, Richard S, Song, Yong Hun, Breton, Ghislain, Goralogia, Greg S, Kwon, Michael S, Laboy Cintrón, Dianne, Koyama, Tomotsugu, Ohme-Takagi, Masaru, Pruneda-Paz, Jose L, Kay, Steve A, MacCoss, Michael J, Imaizumi, Takato

Volltext

Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows von Amodei, Dario, Egertson, Jarrett, MacLean, Brendan X., Johnson, Richard, Merrihew, Gennifer E., Keller, Austin, Marsh, Don, Vitek, Olga, Mallick, Parag, MacCoss, Michael J.

Volltext

Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes von Hoopmann, Michael R, Zelter, Alex, Johnson, Richard S, Riffle, Michael, MacCoss, Michael J, Davis, Trisha N, Moritz, Robert L

Volltext

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments von Gatto, Laurent, Aebersold, Ruedi, Cox, Juergen, Demichev, Vadim, Derks, Jason, Emmott, Edward, Franks, Alexander M., Ivanov, Alexander R., Kelly, Ryan T., Khoury, Luke, Leduc, Andrew, MacCoss, Michael J., Nemes, Peter, Perlman, David H., Petelski, Aleksandra A., Rose, Christopher M., Schoof, Erwin M., Van Eyk, Jennifer, Vanderaa, Christophe, Yates, John R., Slavov, Nikolai

Volltext

Distinct roles of FKF1, GIGANTEA, and ZEITLUPE proteins in the regulation of CONSTANS stability in Arabidopsis photoperiodic flowering von Song, Young Hun, Estrada, Daniel A., Johnson, Richard S., Kim, Somi K., Lee, Sang Yeol, MacCoss, Michael J., Imaizumi, Takato

Volltext

DnaJ Homolog Subfamily B Member 9 Is a Putative Autoantigen in Fibrillary GN von Andeen, Nicole K, Yang, Han-Yin, Dai, Dao-Fu, MacCoss, Michael J, Smith, Kelly D

Volltext

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases von Käll, Lukas, Storey, John D, MacCoss, Michael J, Noble, William Stafford

Volltext

Altered proteome turnover and remodeling by short‐term caloric restriction or rapamycin rejuvenate the aging heart von Dai, Dao‐Fu, Karunadharma, Pabalu P., Chiao, Ying A., Basisty, Nathan, Crispin, David, Hsieh, Edward J., Chen, Tony, Gu, Haiwei, Djukovic, Danijel, Raftery, Daniel, Beyer, Richard P., MacCoss, Michael J., Rabinovitch, Peter S.

Volltext