The ProteomeXchange consortium at 10 years: 2023 update von Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio

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Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline von Sharma, Vagisha, Eckels, Josh, Schilling, Birgit, Ludwig, Christina, Jaffe, Jacob D., MacCoss, Michael J., MacLean, Brendan

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Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut von Kruse, Angela, Fattah-Hosseini, Somayeh, Saha, Surya, Johnson, Richard, Warwick, EricaRose, Sturgeon, Kasie, Mueller, Lukas, MacCoss, Michael J, Shatters, Jr, Robert G, Cilia Heck, Michelle

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The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics von Pino, Lindsay K., Searle, Brian C., Bollinger, James G., Nunn, Brook, MacLean, Brendan, MacCoss, Michael J.

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Sampling the proteome by emerging single-molecule and mass spectrometry methods von MacCoss, Michael J., Alfaro, Javier Antonio, Faivre, Danielle A., Wu, Christine C., Wanunu, Meni, Slavov, Nikolai

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Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0 von The, Matthew, MacCoss, Michael J., Noble, William S., Käll, Lukas

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Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice von Chiao, Ying Ann, Zhang, Huiliang, Sweetwyne, Mariya, Whitson, Jeremy, Ting, Ying Sonia, Basisty, Nathan, Pino, Lindsay K., Quarles, Ellen, Ngoc-Han Nguyen, Campbell, Matthew D., Zhang, Tong, Gaffrey, Matthew J., Merrihew, Gennifer, Wang, Lu, Yue, Yongping, Duan, Dongsheng, Granzier, Henk L., Szeto, Hazel H., Qian, Wei-Jun, Marcinek, David, MacCoss, Michael J., Rabinovitch, Peter

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Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry von Searle, Brian C., Pino, Lindsay K., Egertson, Jarrett D., Ting, Ying S., Lawrence, Robert T., MacLean, Brendan X., Villén, Judit, MacCoss, Michael J.

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TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis von Kubota, Akane, Ito, Shogo, Shim, Jae Sung, Johnson, Richard S, Song, Yong Hun, Breton, Ghislain, Goralogia, Greg S, Kwon, Michael S, Laboy Cintrón, Dianne, Koyama, Tomotsugu, Ohme-Takagi, Masaru, Pruneda-Paz, Jose L, Kay, Steve A, MacCoss, Michael J, Imaizumi, Takato

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The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics von Deutsch, Eric W, Bandeira, Nuno, Sharma, Vagisha, Perez-Riverol, Yasset, Carver, Jeremy J, Kundu, Deepti J, García-Seisdedos, David, Jarnuczak, Andrew F, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, Hermjakob, Henning, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan A

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Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries von Pino, Lindsay K., Just, Seth C., MacCoss, Michael J., Searle, Brian C.

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Using iRT, a normalized retention time for more targeted measurement of peptides von Escher, Claudia, Reiter, Lukas, MacLean, Brendan, Ossola, Reto, Herzog, Franz, Chilton, John, MacCoss, Michael J., Rinner, Oliver

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments von MacLean, Brendan, Tomazela, Daniela M., Shulman, Nicholas, Chambers, Matthew, Finney, Gregory L., Frewen, Barbara, Kern, Randall, Tabb, David L., Liebler, Daniel C., MacCoss, Michael J.

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PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data von Ting, Ying S, Egertson, Jarrett D, Bollinger, James G, Searle, Brian C, Payne, Samuel H, Noble, William Stafford, MacCoss, Michael J

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Multiplexed peptide analysis using data-independent acquisition and Skyline von Egertson, Jarrett D, MacLean, Brendan, Johnson, Richard, Xuan, Yue, MacCoss, Michael J

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The PINK1-Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo von Vincow, Evelyn S., Merrihew, Gennifer, Thomas, Ruth E., Shulman, Nicholas J., Beyer, Richard P., MacCoss, Michael J., Pallanck, Leo J.

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Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows von Amodei, Dario, Egertson, Jarrett, MacLean, Brendan X., Johnson, Richard, Merrihew, Gennifer E., Keller, Austin, Marsh, Don, Vitek, Olga, Mallick, Parag, MacCoss, Michael J.

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Computational and statistical analysis of protein mass spectrometry data von Noble, William Stafford, MacCoss, Michael J

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Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data von Ting, Ying S., Egertson, Jarrett D., Payne, Samuel H., Kim, Sangtae, MacLean, Brendan, Käll, Lukas, Aebersold, Ruedi, Smith, Richard D., Noble, William Stafford, MacCoss, Michael J.

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Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating von Findlay, Geoffrey D, Yi, Xianhua, Maccoss, Michael J, Swanson, Willie J

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