Rapid acquisition and model-based analysis of cell-free transcription–translation reactions from nonmodel bacteria von Moore, Simon J., MacDonald, James T., Wienecke, Sarah, Ishwarbhai, Alka, Tsipa, Argyro, Aw, Rochelle, Kylilis, Nicolas, Bell, David J., McClymont, David W., Jensen, Kirsten, Polizzi, Karen M., Biedendieck, Rebekka, Freemont, Paul S.

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Development of a Bacillus subtilis cell-free transcription-translation system for prototyping regulatory elements von Kelwick, Richard, Webb, Alexander J., MacDonald, James T., Freemont, Paul S.

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Delineation of metabolic gene clusters in plant genomes by chromatin signatures von Yu, Nan, Nützmann, Hans-Wilhelm, MacDonald, James T, Moore, Ben, Field, Ben, Berriri, Souha, Trick, Martin, Rosser, Susan J, Kumar, S Vinod, Freemont, Paul S, Osbourn, Anne

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High-quality protein backbone reconstruction from alpha carbons using Gaussian mixture models von Moore, Benjamin L., Kelley, Lawrence A., Barber, James, Murray, James W., MacDonald, James T.

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Cell-Free Protein Synthesis as a Prototyping Platform for Mammalian Synthetic Biology von Kopniczky, Margarita B, Canavan, Caoimhe, McClymont, David W, Crone, Michael A, Suckling, Lorna, Goetzmann, Bruno, Siciliano, Velia, MacDonald, James T, Jensen, Kirsten, Freemont, Paul S

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Probing the “Dark Matter” of Protein Fold Space von Taylor, William R., Chelliah, Vijayalakshmi, Hollup, Siv Midtun, MacDonald, James T., Jonassen, Inge

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Developments in the tools and methodologies of synthetic biology von Kelwick, Richard, MacDonald, James T, Webb, Alexander J, Freemont, Paul

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gDesigner: computational design of synthetic gRNAs for Cas12a-based transcriptional repression in mammalian cells von Crone, Michael A., MacDonald, James T., Freemont, Paul S., Siciliano, Velia

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Validating a Coarse-Grained Potential Energy Function through Protein Loop Modelling von Macdonald, James T, Kelley, Lawrence A, Freemont, Paul S

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De novo backbone scaffolds for protein design von MacDonald, James T., Maksimiak, Katarzyna, Sadowski, Michael I., Taylor, William R.

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Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis von Lu, Duo, Silhan, Jan, MacDonald, James T, Carpenter, Elisabeth P, Jensen, Kirsten, Tang, Christoph M, Baldwin, Geoff S, Freemont, Paul S

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Computational Sequence Design with R2oDNA Designer von MacDonald, James T., Siciliano, Velia

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Analytic markovian rates for generalized protein structure evolution von Coluzza, Ivan, MacDonald, James T, Sadowski, Michael I, Taylor, William R, Goldstein, Richard A

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One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy von Casini, Arturo, MacDonald, James T, De Jonghe, Joachim, Christodoulou, Georgia, Freemont, Paul S, Baldwin, Geoff S, Ellis, Tom

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Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension von MacDonald, James T., Kabasakal, Burak V., Godding, David, Kraatz, Sebastian, Henderson, Louie, Barber, James, Freemont, Paul S., Murray, James W.

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Atomic Structure of Type VI Contractile Sheath from Pseudomonas aeruginosa von Salih, Osman, He, Shaoda, Planamente, Sara, Stach, Lasse, MacDonald, James T., Manoli, Eleni, Scheres, Sjors H.W., Filloux, Alain, Freemont, Paul S.

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Structural and Mechanistic Insight into the Listeria monocytogenes Two-enzyme Lipoteichoic Acid Synthesis System von Campeotto, Ivan, Percy, Matthew G., MacDonald, James T., Förster, Andreas, Freemont, Paul S., Gründling, Angelika

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R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences von Casini, Arturo, Christodoulou, Georgia, Freemont, Paul S, Baldwin, Geoff S, Ellis, Tom, MacDonald, James T

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Computational design approaches and tools for synthetic biology von MacDonald, James T, Barnes, Chris, Kitney, Richard I, Freemont, Paul S, Stan, Guy-Bart V

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Impedance Spectroscopy: Theory, Experiment, and Applications von Barsoukov, Evgenij, Macdonald, J. Ross

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